View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_39 (Length: 500)
Name: NF8908_low_39
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 492
Target Start/End: Complemental strand, 2915062 - 2914619
Alignment:
| Q |
29 |
ataaaacttgctgttacaaaaagaataaagaagtctaaaggtcgtgatgacggtgacgatatatatgacttaagcttccatgatccactctccccaagac |
128 |
Q |
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| T |
2915062 |
ataaaacttgctgttacaaaaagaataaagaagtctaaaggtcgtgatgacggtgacgatatatatgacttaagcttccatgatccactctcccca---- |
2914967 |
T |
|
| Q |
129 |
aactcttgatgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtagggaaaatagtaacattataataataagtcttttgcatgagaat |
228 |
Q |
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| T |
2914966 |
---------tgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtagggaaaatagtaacattataataataagtcttttgcatgagaat |
2914876 |
T |
|
| Q |
229 |
cttgtcgctagtgatttctcctatctatccaccacccatcgttgtcaaaaacatcaactatttctggttgagtttgaacttagaaggcctacgaacacgt |
328 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
2914875 |
cttgtcgctagtgatttctcctatc----caccacccatcgttgtcaaaaacataaact--ttctggttgagtttgaacttagaaggcctacgaactcgt |
2914782 |
T |
|
| Q |
329 |
ggtggtaccggacaaagatcttttggaaaaagtatctccgtgagaagttcagactcatcatctttaagaaggttcttgtagcgaaccgtatatttccctc |
428 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914781 |
ggtggtactagacaaagatcttttagaaaaagtatctccgtgagaagttcagactcatcatctttaagaaggttcttgtagcgaaccgtatatttccctc |
2914682 |
T |
|
| Q |
429 |
tctcatcaagacatgaaacgattgtgtcttcatagtaagaacctacaagcccatcttctctgct |
492 |
Q |
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| T |
2914681 |
tctcatcaagacatg-aacgattgtgccttcatagtaagaacctacgagcccatcttctttgct |
2914619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 86 - 487
Target Start/End: Original strand, 30962752 - 30963141
Alignment:
| Q |
86 |
gatatatatgacttaagcttccatgatccactctccccaagacaactcttgatgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtag |
185 |
Q |
| |
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||||||||||| ||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |
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| T |
30962752 |
gatatatatgaattatgcctccaagatccactctccccaaaacaacttttgatgaaccctaatttgatcaca-gggtagtaaatagtttgatgggtgtag |
30962850 |
T |
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| Q |
186 |
ggaaaatagtaacattataataataagtcttttgcatgagaatcttgtcgctagtgatttctcctatctatccaccacccatcgttgtcaaaaacatcaa |
285 |
Q |
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| T |
30962851 |
tcaaaata--cacactatagtagtaattgttttccatgaggatcttctcgctagcaattt-tcc---ctacccaccaaccatctttataaaaaacatcaa |
30962944 |
T |
|
| Q |
286 |
ctatttctggttgagtttgaacttagaaggcctacgaacacgtggtggtaccggacaaagatcttttggaaaaagtatctccgtgagaagttcagactca |
385 |
Q |
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| T |
30962945 |
c--tttttgattgagttgaaacttagaaggatttcgaacacgtggctgtgatggacgaagatcttttgataaaagtgtttccataagaagttgagattcg |
30963042 |
T |
|
| Q |
386 |
tcatctttaagaaggttcttgtagcgaaccgtatatttccctctctcatcaagacatgaaacgattgtgtcttcatagtaagaacctacaagcccatctt |
485 |
Q |
| |
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|| ||||||||||| |||||||| |||| | |||||| || ||| ||||| |||||||| |||||| ||||| | || |||||||||| ||| |||| |
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| T |
30963043 |
tcgtctttaagaagattcttgtaacgaatcacatattttccactc---tcaaggcatgaaacaattgtggcttcaaaatatgaacctacaaacccttctt |
30963139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 89 - 476
Target Start/End: Complemental strand, 38782897 - 38782521
Alignment:
| Q |
89 |
atatatgacttaagcttccatgatccactctccccaagacaactcttgatgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtaggga |
188 |
Q |
| |
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|||||||| ||| || || | |||||| ||||||||| ||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||| | |
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| T |
38782897 |
atatatgagttatgcctcgaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtca |
38782798 |
T |
|
| Q |
189 |
aaatagtaacattataataataagtcttttgcatgagaatcttgtcgctagtgatttctcctatctatccaccacccatcgttgtcaaaaacatcaacta |
288 |
Q |
| |
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||||| ||| |||| || || |||||| ||| | ||||| ||||||| ||||| || ||| |||||| |||||||| ||||| ||||||||| |
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| T |
38782797 |
aaatac--acactatagtagcaactcttttccatcaagatcttctcgctagcgattt----tacctacccaccaaccatcgttatcaaatacatcaactt |
38782704 |
T |
|
| Q |
289 |
tttctggttgagtttgaacttagaaggcctacgaacacgtggtggtaccggacaaagatcttttggaaaaagtatctccgtgagaagttcagactcatca |
388 |
Q |
| |
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||| | |||||||| ||||| |||| |||||||| ||||||||| |||| ||||||||||||||||||| | ||| | |||||||| ||||| ||| |
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| T |
38782703 |
ttt--gattgagtttaaacttcaaaggattacgaacatgtggtggtattggacgaagatcttttggaaaaagtgtttccataagaagttccgactcgtca |
38782606 |
T |
|
| Q |
389 |
tctttaagaaggttcttgtagcgaaccgtatatttccctctctcatcaagacatgaaacgattgtgtcttcatagtaagaacctacaa |
476 |
Q |
| |
|
||||||||||| |||||||| || | | |||||| || ||| |||||||||||||| ||||| ||||| |||| |||||||||| |
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| T |
38782605 |
tctttaagaagattcttgtaacggatcacatattttccgctc---tcaagacatgaaacaattgtagcttcaaagtatgaacctacaa |
38782521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 89 - 492
Target Start/End: Complemental strand, 38789069 - 38788677
Alignment:
| Q |
89 |
atatatgacttaagcttccatgatccactctccccaagacaactcttgatgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtaggga |
188 |
Q |
| |
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|||||||| ||| || || | |||||| ||||||||| ||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||| | |
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| T |
38789069 |
atatatgagttatgcctcaaagatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtca |
38788970 |
T |
|
| Q |
189 |
aaatagtaacattataataataagtcttttgcatgagaatcttgtcgctagtgatttctcctatctatccaccacccatcgttgtcaaaaacatcaacta |
288 |
Q |
| |
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||||| ||| |||| || ||| |||||| ||| | ||||| ||||||| |||||| |||| | ||||| |||||||| ||||| ||||||||| |
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| T |
38788969 |
aaatac--acactatagtagtaactcttttccattaagatcttctcgctagcgatttcccctacc----caccaaccatcgttatcaaacacatcaact- |
38788877 |
T |
|
| Q |
289 |
tttctggttgagtttgaacttagaaggcctacgaacacgtggtggtaccggacaaagatcttttggaaaaagtatctccgtgagaagttcagactcatca |
388 |
Q |
| |
|
||||| ||||||| ||| | |||| || |||||||||| |||| |||| ||||||||||||||||||| | ||| | |||||||| || || ||| |
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| T |
38788876 |
-ttctgattgagttcaaacctccaaggattatgaacacgtggcggtaatggacgaagatcttttggaaaaagtgtttccataagaagttccgattcgtca |
38788778 |
T |
|
| Q |
389 |
tctttaagaaggttcttgtagcgaaccgtatatttccctctctcatcaagacatgaaacgattgtgtcttcatagtaagaacctacaagcccatcttctc |
488 |
Q |
| |
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||||||||||| |||||||| || | | |||||| || ||| || ||||||||||| ||||| ||||| |||| |||||||||| ||| |||||| |
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| T |
38788777 |
tctttaagaagattcttgtaacggatcacatattttccactc---tctagacatgaaacaattgtagcttcaaagtacgaacctacaaacccttcttctt |
38788681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 110 - 492
Target Start/End: Original strand, 38743359 - 38743730
Alignment:
| Q |
110 |
gatccactctccccaagacaactcttgatgaaccctaatttgatcacacgggtagtaagtggtttgattggtgtagggaaaatagtaacattataataat |
209 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||| |||||||| ||||||||| | ||||||| | ||| |||||| ||| |||| || | |
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| T |
38743359 |
gatccagtctccccaaaccaattcttgatgaaccctaatctgatcacaagggtagtaaatagtttgatggcaatagtcaaaatac--acactatagtagt |
38743456 |
T |
|
| Q |
210 |
aagtcttttgcatgagaatcttgtcgctagtgatttctcctatctatccaccacccatcgttgtcaaaaacatcaactatttctggttgagtttgaactt |
309 |
Q |
| |
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|| |||||| ||| | ||||| ||||||| |||| ||| ||| |||||| |||||||| ||||| || |||||| ||||| ||||||| ||| | |
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| T |
38743457 |
aactcttttccatcaagatcttctcgctagcaattt-tcc---ctacccaccaaccatcgttatcaaacacgtcaact--ttctgattgagttcaaacct |
38743550 |
T |
|
| Q |
310 |
agaaggcctacgaacacgtggtggtaccggacaaagatcttttggaaaaagtatctccgtgagaagttcagactcatcatctttaagaaggttcttgtag |
409 |
Q |
| |
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||||| ||||||||||||| |||| |||| ||||||||||||||||||| | ||| | |||||||| || || |||||||||||||| |||||||| |
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| T |
38743551 |
cgaaggattacgaacacgtggcggtaatggacgaagatcttttggaaaaagtgtttccataagaagttccgattcgtcatctttaagaagattcttgtaa |
38743650 |
T |
|
| Q |
410 |
cgaaccgtatatttccctctctcatcaagacatgaaacgattgtgtcttcatagtaagaacctacaagcccatcttctctgct |
492 |
Q |
| |
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|| | | |||||| || ||| || ||||||||||| ||||| ||||| |||| |||||||||| ||| |||||| |||| |
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| T |
38743651 |
cggatcacatattttccactc---tctagacatgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgct |
38743730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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