View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_4 (Length: 800)
Name: NF8908_low_4
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 402 - 787
Target Start/End: Complemental strand, 46355985 - 46355600
Alignment:
| Q |
402 |
gtggaatttcaaagattttagattgaaaaagggttaaaaatttgtgtcctaaagtctctttttaaaaattacacgttcaagcatgtcttatatctgcttg |
501 |
Q |
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| T |
46355985 |
gtggaatttcaaagattttagattgaaaaagggttaaaaatttgtgtcctaaagtctctttttaaaaattacacgttcaagcatgtcttatatctgcttg |
46355886 |
T |
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| Q |
502 |
gttattgaatccaagaaactagcatcctaagtaaaactaaaattaactaagcttcttgctagggttttgtggtccaannnnnnnnaccattgatcaaggt |
601 |
Q |
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| T |
46355885 |
gttattgaatccaagaaaccagcatcctaagtaaaactaaaattaactaagcttcttgctagggttttgtggtccatttttttttaccattgatcaaggt |
46355786 |
T |
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| Q |
602 |
tttaaggaactttatttaaaatcttgccgttgatatactttgtgtattattggtcatccaatatgatgaactacggtcaaacggctataaaacagaaaca |
701 |
Q |
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| T |
46355785 |
tttaaggaactttatttaaaatcttgccgttgatatactttgtgtattattggtcatccaatatgatgaactacggtcaaacggctataaaacagaaaca |
46355686 |
T |
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| Q |
702 |
aggcatcttaagtaaattttccaaagatgggatattgaacttctattggtccaagttttccacattaattgtcactttctaattga |
787 |
Q |
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| T |
46355685 |
aggcatcttaagtaaattttccaaagatgggatattgaacttctattggtccaagttttccacattaattgtcactttctaattga |
46355600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 46356372 - 46356039
Alignment:
| Q |
13 |
agcagagataacgaaaatcaagagaaacaaaggtgtaaattatagtactatataacgatatcagtgggtgtgaatggtaccccattatcctgaaaagctc |
112 |
Q |
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| T |
46356372 |
agcaaagataacgaaaatcaagagaaacaaaggtgtaaattatagtactatataacgatatcagtgggtgtgaatggtaccccattaccctgaaaagctc |
46356273 |
T |
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| Q |
113 |
gaatctcaatcagtgaattagaagactcttttttaaccatatctatgagaaaaagtataagaaagagggtatcatattctttctaatagtatttgcttaa |
212 |
Q |
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| T |
46356272 |
gaatctcaatcagtgaattagaagactcttttttaaccatatctatgagaaaaagtataagaaagagggtatcatattctttctaatagtatttgcttaa |
46356173 |
T |
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| Q |
213 |
aatnnnnnnngaaagggagggaatatagactttgaaatttgcactaaaactgacatatgaagcagcagatat----aaggaataagtgaatgtgtttaat |
308 |
Q |
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| T |
46356172 |
aat-aaaaaagaaagggagggaatatagactttgaaatttgcactaaaactgacatatgaagcagcagatataaggaaggaataagtgaatgtgtttaat |
46356074 |
T |
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| Q |
309 |
ttgctagtcgcacacgaccatgagactgaatctgc |
343 |
Q |
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| T |
46356073 |
ttgctagtcacacacgaccatgagactgaatctgc |
46356039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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