View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_41 (Length: 495)
Name: NF8908_low_41
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 37137706 - 37137231
Alignment:
| Q |
8 |
gagcagagaatgaacaactcaagctctctaagtatggggatggttctatttgtggctacaattcccttcagcatcttctcaaggaaaatctcaaacctca |
107 |
Q |
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| T |
37137706 |
gagcagagaatgaacaactcaagctctctaagtatggggatggttctatttgtggctacaattcccttcagcatcttctcaaggaaaatctcaaacctca |
37137607 |
T |
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| Q |
108 |
tcacttccaggtaatctactctcaaactcaaaccaatcattattatactcaaaactcaaacccatttattcattctgctcacatgctgaattcatccttt |
207 |
Q |
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| T |
37137606 |
tcacttccaggtaatctactctcaaactcaaaccaatcgttattatactcaaaactcaaacccatttatttattctgctcacatgctgaattcatccttt |
37137507 |
T |
|
| Q |
208 |
tagcttgtctattatactttcaactactcttttgacattcccggattctcttatataccatcatgtgaaattttgtccaatgaggtgaaattttgcgact |
307 |
Q |
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| T |
37137506 |
tagcttgtctattatactttcaactactcttttgacattcccggattctcttatataccatcatgtgaaattttgtccaatgaggtgaagttttgcgact |
37137407 |
T |
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| Q |
308 |
ctcttcaaaatgatattcagaagagtggtgttattttgacactcaaactactatatggttaatgcaattcaaatattttacttgacacaattagttaagg |
407 |
Q |
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| T |
37137406 |
ctcttcaaaatgatattcagaagagtggtgttattttgacactcaaactactatatggttaatgcaattcaaatattttacttgacacaattagttaagg |
37137307 |
T |
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| Q |
408 |
aatctaacaagatgtcacgactaattaaccaaatactgtagacaattgattaataacgaatgtgaatgtaattaat |
483 |
Q |
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| T |
37137306 |
aatctaacaagatgtcacgactaattaaccaaatactgtagacaattaattaataacgaatgtgaatgtaattaat |
37137231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 37141542 - 37141469
Alignment:
| Q |
46 |
gatggttctatttgtggctacaattcccttcagcatcttctcaaggaaaatctcaaacctcatcacttccaggt |
119 |
Q |
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| T |
37141542 |
gatggttctatttgtggctacgattcccttcaccatcttctcaaggacaatcttaaaccgcatcatttccaggt |
37141469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 904326 - 904251
Alignment:
| Q |
14 |
agaatgaacaactcaagctctctaagtatggggatggttctatttgtggctacaattcccttcagcatcttctcaa |
89 |
Q |
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||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
904326 |
agaatgaacaactcaagctctctaaatatgagtgtggttctatttgtggctacaattcccttcaacatcttctcaa |
904251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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