View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_43 (Length: 491)
Name: NF8908_low_43
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 32377641 - 32377180
Alignment:
| Q |
19 |
agattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgc |
118 |
Q |
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| T |
32377641 |
agattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgc |
32377542 |
T |
|
| Q |
119 |
tctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggagaccaaatgatattactacacttagaatg |
218 |
Q |
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| T |
32377541 |
tctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggagatcaaatgatattactacacttagaatg |
32377442 |
T |
|
| Q |
219 |
attttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagttt |
318 |
Q |
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| T |
32377441 |
attttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagttt |
32377342 |
T |
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| Q |
319 |
gtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgta |
418 |
Q |
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| T |
32377341 |
gtagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgta |
32377242 |
T |
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| Q |
419 |
cattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
480 |
Q |
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| T |
32377241 |
cattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
32377180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 32365955 - 32365495
Alignment:
| Q |
20 |
gattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaacaaagtctgagaggaatacatggtttgaaataagtaaccaaatactaaatgct |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32365955 |
gattctgttcttggtcatgacaggaatgttgaataatgtgctaaaaaaaaagtctgagaggaatacatggtttgaaataaataaccaaatactaaatgct |
32365856 |
T |
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| Q |
120 |
ctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttttgtgtagatggagaccaaatgatattactacacttagaatga |
219 |
Q |
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| T |
32365855 |
ctctttacactaatgtgtttgtatcttcatccaaagaggttccaccatcttgttcttttgtgtagatggacaccaaatgatgtttctgcacttaggatga |
32365756 |
T |
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| Q |
220 |
ttttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttg |
319 |
Q |
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| T |
32365755 |
tttactgcaaaaatggtacttataagcctcatgaatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcactttg |
32365656 |
T |
|
| Q |
320 |
tagtctaaatttaggatataaaagatctgagagaccagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgtac |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
32365655 |
tagtctaaatttaggatataaaagatctgagagaccagccattggagttggaattactatatccattgcaattgcagcaccggcaatagctggattgtac |
32365556 |
T |
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| Q |
420 |
attattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
480 |
Q |
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| T |
32365555 |
actattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttc |
32365495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 78 - 363
Target Start/End: Complemental strand, 36122539 - 36122254
Alignment:
| Q |
78 |
aggaatacatggtttgaaataagtaaccaaatactaaatgctctctttacactaatgtctttgtataatcatccaaagaggttccaccatcttgttcttt |
177 |
Q |
| |
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|||||| | ||||||||| ||| || |||||||| |||||||| |||||||| |||| |||||| || ||||| ||| ||| |||| ||||| ||| |
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| T |
36122539 |
aggaatgcgtggtttgaagtaaacaatcaaatactcaatgctctgtttacactgatgtgtttgtacaagcatccgaagttattctaccaccttgtacttc |
36122440 |
T |
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| Q |
178 |
tgtgtagatggagaccaaatgatattactacacttagaatgattttctgcaaaaatggtacttctaagcctcgtgaatgggcacatatgatggtagttgt |
277 |
Q |
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|||| |||||| |||| ||||| | | |||||||| | | |||||| ||||| |||| |||||||| ||||||| ||| || |||||||| || |
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| T |
36122439 |
tgtgccgatggaattcaaaagatatcgccaaacttagaaaggagtactgcaagaatggaacttataagcctcatgaatggaaacacataatggtagtggt |
36122340 |
T |
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| Q |
278 |
tattctccttcatgttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattg |
363 |
Q |
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|||||| |||||| |||||||| ||||| |||||| |||| ||||||| ||||| ||||||||||||||| | || ||||||| |
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| T |
36122339 |
aattctcggtcatgtgaactgtttcgctcagtatgcactttgcggtctaaacttaggttataaaagatctgagcgcccggccattg |
36122254 |
T |
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