View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8908_low_45 (Length: 466)
Name: NF8908_low_45
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_45 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0082 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 38608335 - 38608783
Alignment:
| Q |
18 |
tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38608335 |
tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc |
38608434 |
T |
|
| Q |
118 |
gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggcctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608435 |
gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggcctt |
38608534 |
T |
|
| Q |
218 |
caaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608535 |
caaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacg |
38608634 |
T |
|
| Q |
318 |
ttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctccct |
417 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38608635 |
ttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctccct |
38608734 |
T |
|
| Q |
418 |
tgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgact |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608735 |
tgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgact |
38608783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 38793118 - 38793566
Alignment:
| Q |
18 |
tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793118 |
tattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattc |
38793217 |
T |
|
| Q |
118 |
gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggcctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793218 |
gaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggcctt |
38793317 |
T |
|
| Q |
218 |
caaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793318 |
caaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacg |
38793417 |
T |
|
| Q |
318 |
ttcacactaccggtgtcaccgtgcttcctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctccct |
417 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793418 |
ttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacggtttcagcatcctctccct |
38793517 |
T |
|
| Q |
418 |
tgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgact |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793518 |
tgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgact |
38793566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 48 - 466
Target Start/End: Complemental strand, 38121758 - 38121340
Alignment:
| Q |
48 |
cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt |
147 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||| |
|
|
| T |
38121758 |
cttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagt |
38121659 |
T |
|
| Q |
148 |
tttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttt |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
38121658 |
cttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctaagctttctccgttt |
38121559 |
T |
|
| Q |
248 |
tcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctg |
347 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| | ||||||||| |||| |
|
|
| T |
38121558 |
tcttgcgacgttgagagaatgagttctctctcctttccgtttcatcctgatcaccgttccggtgctcatgttcacactcccggcgccaccgtgctccctg |
38121459 |
T |
|
| Q |
348 |
ctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcat |
447 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38121458 |
ctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacggtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcat |
38121359 |
T |
|
| Q |
448 |
aactctcaacaacatgact |
466 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38121358 |
aactctcaacaacatgact |
38121340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 48 - 466
Target Start/End: Complemental strand, 28731332 - 28730914
Alignment:
| Q |
48 |
cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
28731332 |
cttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagt |
28731233 |
T |
|
| Q |
148 |
tttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttt |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
28731232 |
attcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgcctctacgctttctccgttt |
28731133 |
T |
|
| Q |
248 |
tcttgtgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcacgttcacactaccggtgtcaccgtgcttcctg |
347 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
28731132 |
tcttgcgacgttgagagaatgacttcactctcctttccgtttcatcctgatcaccgttccagtgctcatgttcacactcccggcgccaccgtgcttcctg |
28731033 |
T |
|
| Q |
348 |
ctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcat |
447 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
28731032 |
ctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacggtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcat |
28730933 |
T |
|
| Q |
448 |
aactctcaacaacatgact |
466 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28730932 |
aactctcaacaacatgact |
28730914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 51801354 - 51801280
Alignment:
| Q |
48 |
cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
51801354 |
cttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccgaaca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 31529286 - 31529212
Alignment:
| Q |
48 |
cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
122 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
31529286 |
cttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccgaaca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 34875934 - 34876008
Alignment:
| Q |
48 |
cttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaaca |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
34875934 |
cttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccgaaca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 34165 - 34038
Alignment:
| Q |
173 |
caaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttcgtctctacactttctccgttttcttgtgacgttgagagaatgactt |
272 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| ||||| | || |||||||||| ||| ||||| ||||| ||||| | |
|
|
| T |
34165 |
caacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttcatctctccgctctctccgttttattgcgacgtggagaggatgacct |
34066 |
T |
|
| Q |
273 |
cactctcctttccgtttcatcctgatca |
300 |
Q |
| |
|
| ||||| || ||||| ||||| ||||| |
|
|
| T |
34065 |
cgctctcgttcccgttccatccagatca |
34038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 444
Target Start/End: Complemental strand, 33997 - 33897
Alignment:
| Q |
344 |
cctgctattatgcgcctcatgctacgagatgctatgctcaggctccgtaataacggtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagc |
443 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| |||||| |||||||||| || || ||||||||||| |||| || |||||||| || ||||| |||| |
|
|
| T |
33997 |
cctgctataatgcgcctgatgctcagagatgccatgctccggctccgtaacaatggcttcagcatcctagccctcgctatgaaggtgaagtacgccgagc |
33898 |
T |
|
| Q |
444 |
t |
444 |
Q |
| |
|
| |
|
|
| T |
33897 |
t |
33897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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