View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8908_low_47 (Length: 462)
Name: NF8908_low_47
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 138 - 449
Target Start/End: Complemental strand, 40886027 - 40885717
Alignment:
| Q |
138 |
atgttttattaatatttcaaactgagaagtgttgaaagtcattataaaggatatacataataaccgaaaaaacttcattctatttgggagggcttatgag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40886027 |
atgttttattaatatttcaaactgagaagtgttgaaagtcattataaaggatatacataataactgaaaaaacttcattctatttgggagggcttatgag |
40885928 |
T |
|
| Q |
238 |
cgacaacaaaactctaagacaaatacataagtggttttagaaaaatagattcttattatgacaaatgcattattgtgtaatgcaaatggttgggtgtgct |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40885927 |
cgacaacaaaactctaagacaaatacataagtggttttagaaaaattgattcttattatgacaaatgcattattgtgtaatgcaaatggttgggtgtg-t |
40885829 |
T |
|
| Q |
338 |
ttgtaaggtgaaactatgacaatacgagttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacatnnnnnnncaaataaccaatccta |
437 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40885828 |
ttgtaaggtaaaattataacaatacgagttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacataaaaaaacaaataaccaatccta |
40885729 |
T |
|
| Q |
438 |
tattcttctcct |
449 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40885728 |
tattcttctcct |
40885717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 40886340 - 40886211
Alignment:
| Q |
17 |
aagtgttgttttacattttattttgacaacccgtgtgttgagattagtcggacaaaagccaacgcaaaatgcaaaacaaataacctaagcatcaaattca |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40886340 |
aagtgtggttttacattttattttgacaacccgtgtgttgagattagtcggacaaaagccaacgcaaaatgcaaaacaaataacctaagcatcaaattca |
40886241 |
T |
|
| Q |
117 |
ccgaatgctaatttcaaaggaatgttttat |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
40886240 |
ccgaatgctaatttcaaaggaatgttttat |
40886211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University