View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_49 (Length: 461)
Name: NF8908_low_49
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 170 - 458
Target Start/End: Complemental strand, 2490060 - 2489772
Alignment:
| Q |
170 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
269 |
Q |
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| T |
2490060 |
tgcacattctctaaacgccagcaatgtgaaatggccttgaagatccttatcatctgaactaactttttggagtgagatccaaatttatttaacacgacag |
2489961 |
T |
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| Q |
270 |
attggaaaatttctcttacttgtgctaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
369 |
Q |
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| T |
2489960 |
attggaaaatttctcttacttgtactaaacaatctgagacatagtcatattgtacccaagagttgactttgcacataaaaaataatagtgttaattaaaa |
2489861 |
T |
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| Q |
370 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcttttgatcttcctcttctct |
458 |
Q |
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| T |
2489860 |
aagaaatgtcactgtttgaccaattgatttaagttcaaaatttgtaacgtagggtgacacactcattgcttttgatcttcctcttctct |
2489772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 2490239 - 2490138
Alignment:
| Q |
43 |
taaactcaacattaaacaaaatgttaaataggcttagaagtttaatctcaccttttaaagttaactcaaaggatgaggatgtccattttacaagcgcgcg |
142 |
Q |
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| T |
2490239 |
taaactcaacattaaacaaaatgttaaataggcttagaagtttaatctcaccttttaaagttaactctaaggatgaggatgtccattttacaagcgcgcg |
2490140 |
T |
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| Q |
143 |
cg |
144 |
Q |
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|| |
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| T |
2490139 |
cg |
2490138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 2493169 - 2493048
Alignment:
| Q |
338 |
ttgcacataaaaaataatagtgttaattaaaaaagaaatgtcactgtttgaccaattgattt---aagttcaaaatttgtaacgtagggtgacacactca |
434 |
Q |
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|||||||||||| | ||||||| ||||||||||| ||| |||| | |||||| || |||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
2493169 |
ttgcacataaaataaaatagtgctaattaaaaaaaaaa-gtcattatttgactaactgataataaaagttcaaaatttgtaacgtagg-tgacacattca |
2493072 |
T |
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| Q |
435 |
ttgcttttgatcttcctcttctct |
458 |
Q |
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| T |
2493071 |
ttgcttttgatcttcatcttctct |
2493048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 2493271 - 2493225
Alignment:
| Q |
273 |
ggaaaatttctcttacttgtgctaaacaatctgagacatagtcatat |
319 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
2493271 |
ggaaaatttctcttacttgtactaaacaatctgaaagatagtcatat |
2493225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 2496702 - 2496658
Alignment:
| Q |
40 |
agataaactcaacattaaacaaaatgttaaataggcttagaagtt |
84 |
Q |
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||||||| ||||||||||||||| |||||||| | |||||||||| |
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| T |
2496702 |
agataaattcaacattaaacaaagtgttaaatggacttagaagtt |
2496658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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