View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_55 (Length: 444)
Name: NF8908_low_55
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 18787308 - 18787716
Alignment:
| Q |
11 |
catcagggaagacaccataatcaaccgaaaaaacatgaatctggacactaattctcgatctcaaagtaaaagcgtt-atctcaacaaaatacaagnnnnn |
109 |
Q |
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| T |
18787308 |
catcagagaagacaccataatcaaccgaaaaaacatgaaactagacactaattctcgatctcgaagtaaaagcgatcaactcaacaaaatccaagaaaac |
18787407 |
T |
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| Q |
110 |
nnnttcataa-ggaagtcaacaattagagcggtagcgtaaacggaacaaactcaaaaaagaagagtgttgtgaatcttacaactagtcacaggctattat |
208 |
Q |
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| T |
18787408 |
aaattcctaaaggaagtcaacaattagagcagtagcgtaaacagaacaaactcaaaaa-gaagagtgttgtgaatcttacaactagtcataggctattat |
18787506 |
T |
|
| Q |
209 |
aggaatctccatgtgggttgatgtgggatcattgtatatattgtgaatcattttattttcgtgtaaactttctacttataatagattgcatctaatgaag |
308 |
Q |
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| T |
18787507 |
aggaatctccatgtgggtagatgtgggatcattgtatatattgtgaatcatttcat------gtaaactttctacttataatag-ttgcatctaatgaag |
18787599 |
T |
|
| Q |
309 |
tttggctattgcacataccactttagtgaaatcatttggttgagaaaattattaaaatgatcacaggtcgattattcacccacacttctatatcttgaaa |
408 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18787600 |
tttggctgttgcacataccactttagtgaaatcatttggttgagaaaattattaaaatgatcacaggtcgattattcacccacacttctatatcgtgaaa |
18787699 |
T |
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| Q |
409 |
atcaaaatgctcttcat |
425 |
Q |
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| T |
18787700 |
atcaaaatgctcttcat |
18787716 |
T |
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