View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8908_low_58 (Length: 440)
Name: NF8908_low_58
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_58 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 41702689 - 41702290
Alignment:
| Q |
19 |
caagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatccctactctccaaaacagcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702689 |
caagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatccctactctccaaaacagcttc |
41702590 |
T |
|
| Q |
119 |
aacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtaaaatgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702589 |
aacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtaaaatgg |
41702490 |
T |
|
| Q |
219 |
aaatatggtggtgacacagtttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaagtgagtttatgtnnnnnnnn |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41702489 |
aaatatggtggtgacacaggttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaagtgagtttaggtaaaaaaga |
41702390 |
T |
|
| Q |
319 |
nnnnctgataatgggaattgctaaaaatcagaagaaactcagaaagtgattttagtttatgaaaaggtgataattgaaagcgattataaaaaggagtact |
418 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41702389 |
aaaactgataatgggatttgctaaaaatcagaagaaactcagaaagtgattttagtttatgaaaaagtgataattgaaagcgattataaaaaggagtact |
41702290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 41470013 - 41470282
Alignment:
| Q |
26 |
ctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttatatccctactctccaaaacagcttcaacactg |
125 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
41470013 |
ctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctgagtctcatatacctattctccaaaacagcttcaacacta |
41470112 |
T |
|
| Q |
126 |
tcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatagacttatcttcaaggttgttgttagggtttgtaaaatggaaatatg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| || |
|
|
| T |
41470113 |
tcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatagacttatcttcaag---attgttagggtttgtggaattggaatctg |
41470209 |
T |
|
| Q |
226 |
gtggtgacacagtttcagttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaaa |
298 |
Q |
| |
|
|||||||| | | |||||||||||||| |||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
41470210 |
gtggtgacccgggttcagttttgggttgcatgttgatgatatgctgaaaaggtggaaactttagaagaaaaaa |
41470282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 41524663 - 41524852
Alignment:
| Q |
77 |
ctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga |
176 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
41524663 |
ctcttctctgagtctcatatacctattctccaaaacagtttcaacactatcaaaagtttcccattgacaagtttgacgcagtaccataacaagatcatga |
41524762 |
T |
|
| Q |
177 |
atagacttatcttcaaggttgttgttagggtttgtaaaatggaaatatggtggtgacacagtttcagttttgggttccatgttcatgata |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
41524763 |
atagacttatcttcaaggttgttgttagggtttgtggaatggaaacatggtggtgacccaggttcagttttgggttgaatgttcatgata |
41524852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 204
Target Start/End: Original strand, 41504358 - 41504481
Alignment:
| Q |
81 |
tctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatgaatag |
180 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||| || |||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
41504358 |
tctctaagtctcatatccctcctctccaaaacagcttcaatgctatcaaaagtgtcccattgacatgttccacgcaataccataacaagatcatgaatag |
41504457 |
T |
|
| Q |
181 |
acttatcttcaaggttgttgttag |
204 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
41504458 |
acttatcttcaagattgttgttag |
41504481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 41515733 - 41515942
Alignment:
| Q |
77 |
ctcttctctgagtcttatatccctactctccaaaacagcttcaacactgtcaaaagtttcccattgacaagttccacgcagtaccagaacaagatcatga |
176 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||||||||||||| |||||| ||||| ||||||| |||||||| | |||| |||||| |||||| |
|
|
| T |
41515733 |
ctcttctctgagtctcatatacctattctccaaaacagcttcaacactatcaaaaatttccaattgacacgttccacgtaacaccataacaagctcatga |
41515832 |
T |
|
| Q |
177 |
atagacttatcttcaaggttgttgttagggtttgtaaaatggaaatatggtggtgacacagtttcagttttgggttccatgttcatgatatggtggaaag |
276 |
Q |
| |
|
||| ||| | ||||| || |||||| ||||| |||||||| |||||||||| ||| |||| |||||||| |||||||||||| | ||||| |
|
|
| T |
41515833 |
atactctttttttcaa---agtcgttaggatttgtggaatggaaacctggtggtgacccaggttcaactttgggttgaatgttcatgataaagcagaaag |
41515929 |
T |
|
| Q |
277 |
gtggaaactttag |
289 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
41515930 |
gtgaaaactttag |
41515942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 41499983 - 41500036
Alignment:
| Q |
244 |
ttttgggttccatgttcatgatatggtggaaaggtggaaactttagtagaaaaa |
297 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
41499983 |
ttttgggttgaatgttcatgatatggtcgaaagttggaaactttagtagaaaaa |
41500036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 41499912 - 41499956
Alignment:
| Q |
164 |
aacaagatcatgaatagacttatcttcaaggttgttgttagggtt |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41499912 |
aacaagatcatgaataggattatcttcaaggttgttcttagggtt |
41499956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 41499868 - 41499900
Alignment:
| Q |
81 |
tctctgagtcttatatccctactctccaaaaca |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
41499868 |
tctctgagtcttaaatccctactctccaaaaca |
41499900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University