View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_60 (Length: 433)
Name: NF8908_low_60
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 22 - 421
Target Start/End: Original strand, 50234709 - 50235108
Alignment:
| Q |
22 |
gagagaagcgagtccgagtagcaaaccaaatcctccagctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgt |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234709 |
gagagaagcgagtccgagtagcaaaccaaatcctcaagctccatatcagctgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgt |
50234808 |
T |
|
| Q |
122 |
caatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaaca |
221 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
50234809 |
cagtggaatctgcaatgaaaccggagaagccagagaggtataagccggcactgttacgaataactcccccaaagcctgcacgaattggagttcatgaaca |
50234908 |
T |
|
| Q |
222 |
actcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttg |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
50234909 |
actcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcaggagttgaatcaccgttgctttgaaaacttgctttg |
50235008 |
T |
|
| Q |
322 |
attgtattggcagagttctggatgtggaagttaagccgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccaccaaa |
421 |
Q |
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||||||| |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50235009 |
attgtatcggcataattttggatgtggaagttaagccgagttggagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgtccaccaaa |
50235108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 46954343 - 46954600
Alignment:
| Q |
22 |
gagagaagcgagtccgagtagcaaaccaaatcctccagctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgt |
121 |
Q |
| |
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||||||||||| |||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46954343 |
gagagaagcgaaaccgagtagcaaaccaattcctcataatccatatctactgccataagaagaccgcggtgaattgccgagagctcagcaagcagaatgt |
46954442 |
T |
|
| Q |
122 |
caatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaaca |
221 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| |
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| T |
46954443 |
cagtggaatctgcaatgaaaccggagaagccagagaggtataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaaca |
46954542 |
T |
|
| Q |
222 |
actcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccata |
279 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
46954543 |
gctcccatccacgttaaggatatggcagtgatgattattactgttccatttgaccata |
46954600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 160 - 351
Target Start/End: Original strand, 46954599 - 46954790
Alignment:
| Q |
160 |
tataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatgattat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
46954599 |
tataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat |
46954698 |
T |
|
| Q |
260 |
tgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtggaag |
351 |
Q |
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| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
46954699 |
tactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgatagtatcagcagaattctggatgtggaag |
46954790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 26701906 - 26702068
Alignment:
| Q |
88 |
cggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactc |
187 |
Q |
| |
|
||||||||||| | |||||| || || | ||| ||| | || ||||||||||||||||| |||||||||||||| | ||| ||||||| ||||||| || |
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|
| T |
26701906 |
cggtgaattgcggtgagctctgcgagcaaaatatcagtagagtctgcaatgaaaccggagaagccagagaggtaaaggccgacactgtttcgaataattc |
26702005 |
T |
|
| Q |
188 |
ccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagt |
250 |
Q |
| |
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||||| | |||| |||| ||||||| || |||||||||||||||||||| || ||||| |||| |
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|
| T |
26702006 |
ccccataacctgcgcgagttggagtaccggaacaactcccatccacatttagaatatgacagt |
26702068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 11052653 - 11052549
Alignment:
| Q |
130 |
tctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccat |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| |||||||| |||| |||| ||||||| || ||||||||| ||| |
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|
| T |
11052653 |
tctgcaatgaaaccggagaagccagagaggtaaaaaccggcactattttgaataac-cccccaaaacctgcgcgagttggagtaccagaacaactctcat |
11052555 |
T |
|
| Q |
230 |
ccacat |
235 |
Q |
| |
|
| |||| |
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|
| T |
11052554 |
ctacat |
11052549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 419
Target Start/End: Complemental strand, 34361326 - 34361037
Alignment:
| Q |
130 |
tctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccat |
229 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||| ||| ||| | |||| |||| ||||| | || |||||||| |||| |
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|
| T |
34361326 |
tctgcgatgaaaccggagaagcaagagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccat |
34361227 |
T |
|
| Q |
230 |
ccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtatt |
329 |
Q |
| |
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| ||||| || || || ||| |||| ||||| || |||||| | ||||| |||||| || | ||| | || ||||||| || | ||| || |||| |
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|
| T |
34361226 |
ctacatttagaatgtgacagagatggttattactattccatctaaccattcgatcatgaggagtggcactgctgttttgaaagctggattttatggtatc |
34361127 |
T |
|
| Q |
330 |
ggcagagttctggatgtggaagttaagccgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccacca |
419 |
Q |
| |
|
||||| ||||| |||| ||| |||| || || || |||||||| || | |||||||||||||||||| |||| ||||||| |||||| |
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|
| T |
34361126 |
cgcagaattctgaatgtagaaactaagtcgcgtaagggaccaagtatcattgctaaggcacatcatgttgtgatgcctccatgtccacca |
34361037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 9792776 - 9792715
Alignment:
| Q |
358 |
cgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccacca |
419 |
Q |
| |
|
|||||||||||||||||||| | | |||| |||||| ||||||||||||||||| |||||| |
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|
| T |
9792776 |
cgagttagagaccaagtttcgttaccaaggtacatcaagtttcgatgtctccatgtccacca |
9792715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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