View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_62 (Length: 427)
Name: NF8908_low_62
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_62 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 10862157 - 10862560
Alignment:
| Q |
18 |
gaatatgggtgcatatatttaatctacttatactattannnnnnnatgtaatatttaatcttttgcttggagttgtagttcacctatgactctgtccaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10862157 |
gaatatgggtgcatatatttaatctacttatactattatttttttatgtaatatttaatcttttgcttggagttgtagttcacctatgactctgtccaag |
10862256 |
T |
|
| Q |
118 |
aagaaggccaatcgccgtgatcgcgttgatcgaattagtgacttaccatgtaatgtcattgatggcatcgtaaaacacttgagcatccaagagctag--- |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10862257 |
aagaaggccaatcgccgtgatcgcgttgattgaattagtgacttaccatgtaatgtcattgatggcatcctaaaacacttgagcatccaagagctagtta |
10862356 |
T |
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| Q |
215 |
-ttagtaccagtattctgtctagaaaatggaggtatatgtggacttcagtccaacacgaaccacttttgttcgacgaggacttttttagtaggtttgagg |
313 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||| ||||| |||||| ||||||||||||| |||||||||| |
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| T |
10862357 |
attagtaccagtattctgtcaagaaaatggagctatatgtggacttcagtttgatacgaacaccttttattcgacaaggacttttttagaaggtttgagg |
10862456 |
T |
|
| Q |
314 |
atcttgatgaccctggccctgagatttctagaattatcactgaagttcttttccttcacaatgggccgatatatggttttgctcttgacatccctatccc |
413 |
Q |
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| T |
10862457 |
atcatgatggccctggcccttagatttctagaattatcactgaagttcttttccttcacaatgggccgatatatggttttgctcttgacatccctatccc |
10862556 |
T |
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| Q |
414 |
tatg |
417 |
Q |
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|||| |
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| T |
10862557 |
tatg |
10862560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 40011349 - 40011154
Alignment:
| Q |
70 |
atttaatcttttgcttggagttgtagttcacctatgactctgtccaagaagaaggccaatcgccgtgatcgcgttgatcgaattagtgacttaccatgta |
169 |
Q |
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| T |
40011349 |
atttactcttttgcttgaatttgtagttcactgatgactctgttcacgaagaaggccaattgcggtgatcacattgatcgaatcagtgacttaccaagta |
40011250 |
T |
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| Q |
170 |
atgtcattgatggcatcgtaaaacacttgagcatccaagagctagttagtaccagtattctgtctagaaaatggaggtatatgtggacttcagtcc |
265 |
Q |
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| T |
40011249 |
atgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtctagaaagtggaggtatatgtggattacagtcc |
40011154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 40011093 - 40011044
Alignment:
| Q |
338 |
tttctagaattatcactgaagttcttttccttcacaatgggccgatatat |
387 |
Q |
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|||| ||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
40011093 |
tttcaagaattatcacggaagttcttttcctccacaatggaccgatatat |
40011044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 64 - 408
Target Start/End: Complemental strand, 3805 - 3467
Alignment:
| Q |
64 |
tgtaatatttaatcttttgcttggagttgtagttcacctatgactctgtccaagaagaaggccaatcgccgtgatcgcgttgatcgaattagtgacttac |
163 |
Q |
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|||| |||||| ||||||||||| | ||| ||||||||||||||||||||| |||||| |||||||| |||||| | |||||||||| |||||||||| |
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| T |
3805 |
tgtactatttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcacattgatcgaatcagtgacttac |
3706 |
T |
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| Q |
164 |
catgtaatgtcattgatggcatcgtaaaacacttgagcatccaagagctagttagtaccagtattctgtctagaaaatggaggtatatgtggacttcagt |
263 |
Q |
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| T |
3705 |
catgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagt |
3606 |
T |
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| Q |
264 |
ccaacacgaac--cacttttgttcgacgaggacttttttagtaggtttgaggatcttgatgaccctggccctgagatttctagaattatcactgaagttc |
361 |
Q |
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|| || ||| || |||||| |||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
3605 |
cccac---aacttcaattttgt-----gaggacttcttttgtaggttcgaggatcttaatgaccctggccctgagatttctagaattatcaccgaaattc |
3514 |
T |
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| Q |
362 |
ttttccttcacaatgggccgatatatggttttgctcttgacatccct |
408 |
Q |
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|||| || |||||||||||||||||| | ||| |||||| |||||| |
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| T |
3513 |
ttttactccacaatgggccgatatatagatttattcttgatatccct |
3467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 16865269 - 16865462
Alignment:
| Q |
68 |
atatttaatcttttgcttggagttgtagttcacctatgactctgtccaagaagaaggccaatcgccgtgatcgcgttgatcgaattagtgacttaccatg |
167 |
Q |
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||||||| ||||||||||| | ||||||||||| |||||||||||| || |||||||||||| | |||||| | |||||||||| |||||||||||| | |
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| T |
16865269 |
atatttactcttttgcttgaatttgtagttcacttatgactctgtctaacaagaaggccaattacggtgatcaccttgatcgaatcagtgacttaccaag |
16865368 |
T |
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| Q |
168 |
taatgtcattgatggcatcgtaaaacacttgagcatccaagagctagttagtaccagtattctgtctagaaaatggaggtatatgtggacttca |
261 |
Q |
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| T |
16865369 |
taatgtcattgatggcattctacaacacctgaacatccgagacctagctaggaccagtattctatctagaaagtggagggatatatggatttca |
16865462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 16865530 - 16865585
Alignment:
| Q |
329 |
gccctgagatttctagaattatcactgaagttcttttccttcacaatgggccgata |
384 |
Q |
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| T |
16865530 |
gccctgaggtttgtataattatcacggaagttcttttgctccacaatgggccgata |
16865585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 35749406 - 35749227
Alignment:
| Q |
80 |
ttgcttggagttgtagttcacctatgactctgtccaagaagaaggccaatcgccgtgatcgcgttgatcgaattagtgacttaccatgtaatgtcattga |
179 |
Q |
| |
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||||||| | |||||||| | |||||||||||| || ||||||||||||| ||||| | |||||||||| |||||||||||||||||||| ||||| |
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| T |
35749406 |
ttgcttgaatttgtagttaccttatgactctgtctaacaagaaggccaatca---tgatcacattgatcgaatcagtgacttaccatgtaatgttattga |
35749310 |
T |
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| Q |
180 |
tggcatcgtaaaacacttgagcatccaagagctagttagtaccagtattctgtctagaaaatggaggtatatgtggacttcag |
262 |
Q |
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|| ||| || || |||| |||| |||| |||||||| || |||||| |||| | ||| |||||||||||||| ||||||| |
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| T |
35749309 |
tgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtcaaaaaattggaggtatatgtgaacttcag |
35749227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 35742984 - 35742869
Alignment:
| Q |
143 |
ttgatcgaattagtgacttaccatgtaatgtcattgatggcatcgtaaaacacttgagcatccaagagctagttagtaccagtattctgtctagaaaatg |
242 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||||| | ||||||| |||| |||| |||||| | || |||||| |||||| | | || |
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| T |
35742984 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaacagtg |
35742885 |
T |
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| Q |
243 |
gaggtatatgtggact |
258 |
Q |
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|||||||| ||||||| |
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| T |
35742884 |
gaggtataagtggact |
35742869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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