View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_low_65 (Length: 420)

Name: NF8908_low_65
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_low_65
NF8908_low_65
[»] chr5 (22 HSPs)
chr5 (162-401)||(7183137-7183376)
chr5 (161-401)||(15912958-15913198)
chr5 (167-401)||(39056279-39056513)
chr5 (217-401)||(33868834-33869018)
chr5 (167-272)||(6054370-6054475)
chr5 (218-294)||(7183331-7183407)
chr5 (218-294)||(33868973-33869049)
chr5 (218-294)||(39056248-39056324)
chr5 (167-219)||(33868160-33868212)
chr5 (167-219)||(4674965-4675017)
chr5 (167-219)||(16552648-16552700)
chr5 (167-219)||(16668803-16668855)
chr5 (218-277)||(15912944-15913003)
chr5 (167-219)||(3884044-3884096)
chr5 (167-219)||(18465565-18465617)
chr5 (333-401)||(25192313-25192381)
chr5 (255-292)||(30407683-30407720)
chr5 (255-292)||(30407884-30407921)
chr5 (255-292)||(30408086-30408123)
chr5 (255-292)||(30408691-30408728)
chr5 (255-292)||(30408891-30408928)
chr5 (167-212)||(30783440-30783485)
[»] chr4 (35 HSPs)
chr4 (160-401)||(2847937-2848177)
chr4 (162-402)||(34986243-34986482)
chr4 (196-401)||(20588071-20588276)
chr4 (214-401)||(9561091-9561278)
chr4 (218-334)||(9561020-9561136)
chr4 (214-295)||(9561582-9561663)
chr4 (218-295)||(55780302-55780379)
chr4 (218-295)||(55844482-55844559)
chr4 (218-294)||(2847906-2847982)
chr4 (218-294)||(20588040-20588116)
chr4 (214-287)||(810233-810306)
chr4 (167-219)||(24686577-24686629)
chr4 (167-219)||(25574137-25574189)
chr4 (167-219)||(16298926-16298978)
chr4 (1-54)||(46673552-46673605)
chr4 (255-292)||(808744-808781)
chr4 (255-292)||(809115-809152)
chr4 (255-292)||(809486-809523)
chr4 (255-292)||(809656-809693)
chr4 (255-292)||(810027-810064)
chr4 (255-292)||(54754358-54754395)
chr4 (167-219)||(38010146-38010198)
chr4 (167-219)||(55765486-55765538)
chr4 (250-292)||(808945-808987)
chr4 (250-292)||(54757723-54757765)
chr4 (253-294)||(9560960-9561001)
chr4 (167-212)||(13635741-13635786)
chr4 (178-219)||(30357823-30357864)
chr4 (167-212)||(49492528-49492573)
chr4 (255-292)||(54756723-54756760)
chr4 (255-292)||(54756924-54756961)
chr4 (255-292)||(54757527-54757564)
chr4 (256-292)||(809316-809352)
chr4 (357-401)||(1701151-1701195)
chr4 (167-211)||(10472502-10472546)
[»] scaffold0069 (2 HSPs)
scaffold0069 (170-401)||(51367-51598)
scaffold0069 (218-294)||(51553-51629)
[»] chr7 (33 HSPs)
chr7 (167-401)||(6797212-6797446)
chr7 (167-401)||(45402697-45402931)
chr7 (202-402)||(21405857-21406055)
chr7 (214-330)||(12283282-12283398)
chr7 (214-330)||(10564153-10564269)
chr7 (218-330)||(12283395-12283507)
chr7 (218-330)||(12283504-12283616)
chr7 (214-297)||(12283079-12283162)
chr7 (218-294)||(45402666-45402742)
chr7 (217-308)||(10564457-10564548)
chr7 (217-295)||(10563830-10563908)
chr7 (218-308)||(10564266-10564356)
chr7 (169-219)||(39007658-39007708)
chr7 (218-294)||(6797182-6797257)
chr7 (340-384)||(16931963-16932007)
chr7 (340-384)||(16937346-16937390)
chr7 (167-219)||(34875494-34875546)
chr7 (167-219)||(44141260-44141312)
chr7 (257-308)||(10564592-10564643)
chr7 (217-294)||(10564648-10564725)
chr7 (167-219)||(5757391-5757443)
chr7 (257-308)||(10564401-10564452)
chr7 (255-292)||(4721019-4721056)
chr7 (356-401)||(10564266-10564311)
chr7 (356-401)||(12283395-12283440)
chr7 (356-401)||(12283504-12283549)
chr7 (167-219)||(46346725-46346777)
chr7 (250-292)||(13420428-13420470)
chr7 (250-292)||(13420629-13420671)
chr7 (167-212)||(16933260-16933305)
chr7 (167-212)||(16938643-16938688)
chr7 (162-219)||(24359871-24359928)
chr7 (188-220)||(48305261-48305293)
[»] scaffold0460 (2 HSPs)
scaffold0460 (170-401)||(1612-1843)
scaffold0460 (218-294)||(1798-1874)
[»] scaffold0006 (3 HSPs)
scaffold0006 (167-401)||(209331-209565)
scaffold0006 (170-282)||(171513-171625)
scaffold0006 (218-294)||(209520-209596)
[»] chr2 (26 HSPs)
chr2 (162-402)||(24024450-24024690)
chr2 (264-401)||(28056102-28056239)
chr2 (214-295)||(28048244-28048325)
chr2 (238-330)||(30771316-30771409)
chr2 (218-302)||(30771407-30771491)
chr2 (167-219)||(5098721-5098773)
chr2 (218-292)||(28056194-28056268)
chr2 (167-219)||(39548047-39548099)
chr2 (167-219)||(13081869-13081921)
chr2 (167-219)||(40853688-40853740)
chr2 (250-292)||(21173668-21173710)
chr2 (250-292)||(27970565-27970607)
chr2 (255-292)||(44348258-44348295)
chr2 (255-292)||(44350782-44350819)
chr2 (167-219)||(25995291-25995343)
chr2 (167-219)||(36636946-36636998)
chr2 (250-292)||(27970194-27970236)
chr2 (250-292)||(28056699-28056741)
chr2 (170-219)||(16142084-16142133)
chr2 (255-292)||(21173498-21173535)
chr2 (250-287)||(27970364-27970401)
chr2 (250-287)||(28056869-28056906)
chr2 (250-287)||(30767577-30767614)
chr2 (250-287)||(30771740-30771777)
chr2 (167-219)||(4281797-4281849)
chr2 (255-287)||(44348464-44348496)
[»] scaffold0012 (2 HSPs)
scaffold0012 (167-401)||(119207-119441)
scaffold0012 (218-294)||(119396-119472)
[»] chr3 (28 HSPs)
chr3 (167-401)||(32232996-32233230)
chr3 (161-402)||(41568830-41569069)
chr3 (218-294)||(32233185-32233261)
chr3 (321-391)||(51452934-51453004)
chr3 (214-295)||(40219300-40219381)
chr3 (214-295)||(40219501-40219582)
chr3 (214-295)||(40219702-40219783)
chr3 (214-295)||(40219903-40219984)
chr3 (167-214)||(51682016-51682063)
chr3 (167-219)||(23755290-23755342)
chr3 (167-219)||(47728393-47728445)
chr3 (167-214)||(37319474-37319521)
chr3 (167-216)||(39195120-39195169)
chr3 (167-219)||(53594973-53595025)
chr3 (250-292)||(11974935-11974977)
chr3 (170-219)||(28299961-28300010)
chr3 (167-219)||(9106272-9106324)
chr3 (167-219)||(23699332-23699384)
chr3 (167-219)||(23717787-23717839)
chr3 (167-219)||(23736243-23736295)
chr3 (160-219)||(41192359-41192418)
chr3 (250-292)||(11975105-11975147)
chr3 (250-292)||(11975275-11975317)
chr3 (250-292)||(11975445-11975487)
chr3 (167-212)||(26662554-26662599)
chr3 (167-212)||(30947927-30947972)
chr3 (167-212)||(33414029-33414074)
chr3 (162-219)||(51846789-51846846)
[»] scaffold0717 (2 HSPs)
scaffold0717 (160-401)||(7169-7410)
scaffold0717 (218-294)||(7138-7214)
[»] chr1 (31 HSPs)
chr1 (167-401)||(13590472-13590706)
chr1 (170-401)||(20372213-20372436)
chr1 (167-325)||(5077351-5077509)
chr1 (283-401)||(20481214-20481332)
chr1 (170-282)||(13673899-13674011)
chr1 (214-295)||(19845812-19845893)
chr1 (218-294)||(13590661-13590737)
chr1 (218-294)||(20372391-20372467)
chr1 (218-294)||(20481287-20481363)
chr1 (167-219)||(33097410-33097462)
chr1 (167-219)||(51801742-51801794)
chr1 (167-219)||(37639346-37639398)
chr1 (167-219)||(44260523-44260575)
chr1 (167-214)||(35198195-35198242)
chr1 (332-401)||(19846032-19846101)
chr1 (167-219)||(31529674-31529726)
chr1 (167-219)||(44688619-44688671)
chr1 (233-292)||(19846071-19846130)
chr1 (255-292)||(37223273-37223310)
chr1 (255-292)||(37223613-37223650)
chr1 (255-292)||(37223783-37223820)
chr1 (255-292)||(37223953-37223990)
chr1 (167-211)||(51420350-51420394)
chr1 (158-213)||(28323347-28323402)
chr1 (158-211)||(2741032-2741085)
chr1 (259-292)||(37223447-37223480)
chr1 (255-292)||(37224123-37224160)
chr1 (167-212)||(49936953-49936998)
chr1 (167-212)||(50351808-50351853)
chr1 (167-219)||(11421599-11421651)
chr1 (167-207)||(30788353-30788393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (167-401)||(450207-450440)
scaffold0002 (218-294)||(450395-450471)
[»] chr6 (25 HSPs)
chr6 (188-401)||(7851365-7851575)
chr6 (167-401)||(32556349-32556585)
chr6 (214-401)||(18762671-18762858)
chr6 (218-330)||(18762604-18762716)
chr6 (218-330)||(18762495-18762607)
chr6 (162-239)||(27079919-27079996)
chr6 (218-289)||(32556540-32556611)
chr6 (223-295)||(28123070-28123142)
chr6 (218-291)||(7851530-7851603)
chr6 (214-288)||(28122930-28123004)
chr6 (169-214)||(16968037-16968082)
chr6 (255-292)||(22038107-22038144)
chr6 (162-219)||(30908652-30908709)
chr6 (167-219)||(18611193-18611245)
chr6 (167-214)||(4338634-4338681)
chr6 (233-292)||(28123519-28123578)
chr6 (250-292)||(15034036-15034078)
chr6 (356-401)||(18762562-18762607)
chr6 (332-401)||(28123281-28123350)
chr6 (255-292)||(28123342-28123379)
chr6 (340-401)||(28123488-28123549)
chr6 (167-212)||(31216667-31216712)
chr6 (218-294)||(18762422-18762498)
chr6 (356-396)||(18762458-18762498)
chr6 (255-287)||(22038313-22038345)
[»] chr8 (29 HSPs)
chr8 (162-327)||(44508953-44509118)
chr8 (214-295)||(17225380-17225461)
chr8 (214-295)||(40005568-40005649)
chr8 (214-295)||(40005769-40005850)
chr8 (167-219)||(2522872-2522924)
chr8 (167-219)||(40247294-40247346)
chr8 (214-289)||(40005970-40006045)
chr8 (167-214)||(10443584-10443631)
chr8 (167-219)||(12355427-12355479)
chr8 (3-54)||(44428235-44428286)
chr8 (250-292)||(17057590-17057632)
chr8 (250-292)||(17225658-17225700)
chr8 (250-292)||(17590593-17590635)
chr8 (239-289)||(40006167-40006217)
chr8 (162-219)||(9852270-9852327)
chr8 (158-219)||(13526680-13526741)
chr8 (158-219)||(13616215-13616276)
chr8 (162-219)||(34648137-34648194)
chr8 (176-219)||(23396491-23396534)
chr8 (255-289)||(40006097-40006131)
chr8 (239-289)||(40006124-40006174)
chr8 (255-292)||(17057388-17057425)
chr8 (332-401)||(17225602-17225671)
chr8 (255-292)||(17590800-17590837)
chr8 (167-212)||(30413919-30413964)
chr8 (167-219)||(15181795-15181847)
chr8 (167-219)||(15227035-15227087)
chr8 (158-206)||(28698603-28698651)
chr8 (171-219)||(30651958-30652006)
[»] scaffold0065 (7 HSPs)
scaffold0065 (214-401)||(409-596)
scaffold0065 (226-397)||(559-722)
scaffold0065 (214-295)||(21-102)
scaffold0065 (218-330)||(681-793)
scaffold0065 (356-401)||(790-835)
scaffold0065 (218-294)||(790-865)
scaffold0065 (224-282)||(162-220)
[»] scaffold0104 (5 HSPs)
scaffold0104 (214-401)||(39141-39325)
scaffold0104 (214-295)||(39473-39554)
scaffold0104 (214-295)||(39850-39931)
scaffold0104 (223-292)||(39112-39181)
scaffold0104 (218-292)||(38883-38957)
[»] scaffold0019 (3 HSPs)
scaffold0019 (214-401)||(168514-168698)
scaffold0019 (214-295)||(168320-168401)
scaffold0019 (230-292)||(168665-168727)
[»] scaffold0050 (11 HSPs)
scaffold0050 (214-330)||(16194-16310)
scaffold0050 (219-323)||(22770-22874)
scaffold0050 (233-309)||(16106-16182)
scaffold0050 (217-313)||(22584-22680)
scaffold0050 (217-313)||(22680-22780)
scaffold0050 (258-312)||(22877-22931)
scaffold0050 (217-295)||(16511-16589)
scaffold0050 (356-401)||(22634-22679)
scaffold0050 (362-401)||(22734-22773)
scaffold0050 (362-401)||(22830-22869)
scaffold0050 (356-401)||(16056-16101)
[»] scaffold0558 (5 HSPs)
scaffold0558 (214-330)||(10636-10752)
scaffold0558 (214-295)||(10432-10513)
scaffold0558 (214-295)||(10055-10136)
scaffold0558 (223-292)||(10762-10831)
scaffold0558 (357-401)||(10758-10802)
[»] scaffold0553 (1 HSPs)
scaffold0553 (214-295)||(6371-6450)
[»] scaffold0455 (5 HSPs)
scaffold0455 (223-295)||(1156-1228)
scaffold0455 (214-288)||(1016-1090)
scaffold0455 (332-401)||(1566-1635)
scaffold0455 (233-292)||(1804-1863)
scaffold0455 (340-401)||(1773-1834)
[»] scaffold0534 (2 HSPs)
scaffold0534 (250-292)||(5931-5973)
scaffold0534 (250-292)||(8864-8906)
[»] scaffold0023 (3 HSPs)
scaffold0023 (250-292)||(126256-126298)
scaffold0023 (250-292)||(126426-126468)
scaffold0023 (255-292)||(128579-128616)
[»] scaffold0144 (12 HSPs)
scaffold0144 (255-292)||(19721-19758)
scaffold0144 (255-292)||(28835-28872)
scaffold0144 (255-292)||(30981-31018)
scaffold0144 (255-292)||(33393-33430)
scaffold0144 (255-292)||(33903-33940)
scaffold0144 (255-292)||(34073-34110)
scaffold0144 (259-292)||(19385-19418)
scaffold0144 (255-292)||(19551-19588)
scaffold0144 (255-292)||(28665-28702)
scaffold0144 (255-292)||(33563-33600)
scaffold0144 (255-292)||(34243-34280)
scaffold0144 (259-292)||(34583-34616)
[»] scaffold0581 (1 HSPs)
scaffold0581 (255-292)||(310-347)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 162 - 401
Target Start/End: Original strand, 7183137 - 7183376
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatca 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  7183137 gggagaagttattatgcataagtcagttccttatgcacactgcataaacacttcacaaaaccattagacaattattttggtttctcatagaagactatca 7183236  T
Q  262 aaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaact 361  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  7183237 aaatcattaaaccataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaacc 7183336  T
Q  362 attacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7183337 attacacaattatcttggtttcacatacaagactatcaaa 7183376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 161 - 401
Target Start/End: Complemental strand, 15913198 - 15912958
Alignment:
Q  161 ggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatc 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||    
T  15913198 ggggagaagttattatgcataagtcagttccttatgcatcctgcataaacactttacaaaaccatcatacaattattttggtttctcatagaagactatc 15913099  T
Q  261 aaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaac 360  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15913098 aaaatcattaaaccataattatggtttcagtaataattttagtgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaac 15912999  T
Q  361 tattacacaattatcttggtttcacatacaagactatcaaa 401  Q
     ||||||||||||| ||||||||||||||||||||||||||    
T  15912998 cattacacaattatattggtttcacatacaagactatcaaa 15912958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 167 - 401
Target Start/End: Complemental strand, 39056513 - 39056279
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||| ||| || |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  39056513 aagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaaaaccattagacaattattttggtttctcatagaagactatcaaaacc 39056414  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||| |||||||| |||||||||||||| |||||    
T  39056413 attaaaccataattatggtttcagtaataatttcagtgtataccatcttaatcgttatttaaaaccatgtcacaataatcatttcattaaaaaccattac 39056314  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  39056313 acaattatcttggtttcacatacaagactatcaaa 39056279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 217 - 401
Target Start/End: Original strand, 33868834 - 33869018
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatctta 316  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33868834 caaaatcattagacaattattttggtttctcatagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcagtgtataacatctta 33868933  T
Q  317 atcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  33868934 atcattatttaaaaccatgtaacaataataatttcattaaaaatcattacacaattatcttggtttcacatacaagactatcaaa 33869018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 6054370 - 6054475
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||| ||||||||||||||| || | |||||| |||  |||| || || ||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  6054370 aagtcattatgcataagtcattttcctatgcatcctatataagcatttcacaaaattattagacaattattttggtttctcatagaagacaatcaaaacc 6054469  T
Q  267 attaaa 272  Q
    ||||||    
T  6054470 attaaa 6054475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 7183331 - 7183407
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  7183331 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 7183407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 33868973 - 33869049
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| |||||||| || | |||||||||||||||||||||||||| || |||||||||||||    
T  33868973 aaaatcattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttttggtttcagtaat 33869049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 39056324 - 39056248
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  39056324 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 39056248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 33868160 - 33868212
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33868160 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 33868212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 4674965 - 4675017
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  4674965 aagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaa 4675017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 16552700 - 16552648
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  16552700 aagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaa 16552648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 16668855 - 16668803
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  16668855 aagttattatgcataagacatttccttatgcaccctgcataaacacttcacaa 16668803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 15913003 - 15912944
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccata 277  Q
    |||| ||||| |||||||| |||||||| || | ||||||||||||||||||||||||||    
T  15913003 aaaaccattacacaattatattggtttcacatacaagactatcaaaaccattaaaccata 15912944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 3884096 - 3884044
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  3884096 aagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaa 3884044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 18465617 - 18465565
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||| ||||||| ||||||||||||||| ||||    
T  18465617 aagttattatgcataagacatttcattatgcatcctgcataaacacttcacaa 18465565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 25192381 - 25192313
Alignment:
Q  333 atgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||||||||||| ||||| |||||||  |||||||||||| ||||| || ||| |||||    
T  25192381 atgtaccaataataatttcatttaaaaccattacacccttatcttggttttacatagaacactttcaaa 25192313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 30407720 - 30407683
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  30407720 actatcaaaaccattataccatacttatggtttcagta 30407683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 30407921 - 30407884
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  30407921 actatcaaaaccattataccatacttatggtttcagta 30407884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 30408123 - 30408086
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  30408123 actatcaaaaccattataccatacttatggtttcagta 30408086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 30408728 - 30408691
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  30408728 actatcaaaaccattataccatacttatggtttcagta 30408691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 30408928 - 30408891
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  30408928 actatcaaaaccattataccatacttatggtttcagta 30408891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 30783440 - 30783485
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  30783440 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 30783485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 160 - 401
Target Start/End: Complemental strand, 2848177 - 2847937
Alignment:
Q  160 tggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  2848177 tggggagaagttattatgcataagtcagttccttatgcaccctgcataaatactttacaaaaccattagacaattattttagtttctcatagaagactat 2848078  T
Q  260 caaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaa 359  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2848077 caaaaccattaaac-ataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaa 2847979  T
Q  360 ctattacacaattatcttggtttcacatacaagactatcaaa 401  Q
      ||||||||||||||||||||||||||||||||||||||||    
T  2847978 tcattacacaattatcttggtttcacatacaagactatcaaa 2847937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 162 - 402
Target Start/End: Original strand, 34986243 - 34986482
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatca 261  Q
    |||||||| |||||||||||||||||| | ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  34986243 gggagaagatattatgcataagtcagt-cattatgcaccctacataaacacttcacaaaaccattagacaattattttggtttctcatagaagactatca 34986341  T
Q  262 aaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaact 361  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  34986342 aaaccattaaaccataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaacc 34986441  T
Q  362 attacacaattatcttggtttcacatacaagactatcaaat 402  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34986442 attacacaattatcttggtttcacatacaagactatcaaat 34986482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 196 - 401
Target Start/End: Complemental strand, 20588276 - 20588071
Alignment:
Q  196 gcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||||| ||||||  ||| || |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  20588276 gcaccctgtataaacacttcacaaaactatttgataattattttggtttctcatagaagactatcaaaaccattaaatcataattatggtttcactaata 20588177  T
Q  296 atttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagact 395  Q
     ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  20588176 gtttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataattttattaaaaatcattacacaattatcttggtttcacatacaagact 20588077  T
Q  396 atcaaa 401  Q
    ||||||    
T  20588076 atcaaa 20588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 214 - 401
Target Start/End: Complemental strand, 9561278 - 9561091
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  ||||| |||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||     
T  9561278 ttacaaaaccattagacaattattttggtttcacattgaagattatcaaaaccattaaatcatacttatggtttcagtaataattttagtgtataacatg 9561179  T
Q  314 ttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||  |||| |||||||| ||||||||| |||||||| |||||||    
T  9561178 ttaatcattatttaaaatcatgtaccaataataatttcatttaaaaacattagacaattattttggtttcatatacaagaatatcaaa 9561091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 218 - 334
Target Start/End: Complemental strand, 9561136 - 9561020
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| |||||||||||||||||||||||  | | |||| |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  9561136 aaaaacattagacaattattttggtttcatatacaagaatatcaaaatcattaaaccatacttatggtttcagtaataatttcagtgtataacatcttaa 9561037  T
Q  318 tcattatttaaaatcat 334  Q
    |||||||||||||||||    
T  9561036 tcattatttaaaatcat 9561020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 9561663 - 9561582
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    ||||||||  ||||||||||||||||| |||| || |||| ||||||||||||||||||||||| |||||||||||||||||    
T  9561663 ttacaaaactattagacaattattttgatttcacatagaacactatcaaaaccattaaaccatacttatggtttcagtaata 9561582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 55780302 - 55780379
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||    
T  55780302 aaaaccattagacaattagtttggtttcacatagaatactatcaaaaccattaaaccatacttatggtttcagtaata 55780379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 55844482 - 55844559
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||    
T  55844482 aaaaccattagacaattagtttggtttcacatagaatactatcaaaaccattaaaccatacttatggtttcagtaata 55844559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 2847982 - 2847906
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  2847982 aaaatcattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 2847906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 20588116 - 20588040
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  20588116 aaaatcattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 20588040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 810306 - 810233
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||||||| ||||||||||||| ||||||||| || || | ||||||||||||||||||||||| |||||||||    
T  810306 ttacaaaaccattagacaattagtttggtttcacataggacactatcaaaaccattaaaccatacttatggttt 810233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 24686577 - 24686629
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24686577 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 24686629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 25574189 - 25574137
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  25574189 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 25574137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 16298926 - 16298978
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  16298926 aagttattatgcataagtcatttccttatgcaccctgcataatcacttcacaa 16298978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46673605 - 46673552
Alignment:
Q  1 agtttgtgtgactgataatgctacttttgttcctccggtttaaggaaagtgaag 54  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||    
T  46673605 agtttgtgtgactgatagtgctactgttgttcctctggtttaaggaaagagaag 46673552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 808781 - 808744
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  808781 actatcaaaaccattaaaccatacttatggtttcagta 808744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 809152 - 809115
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  809152 actatcaaaaccattaaaccatacttatggtttcagta 809115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 809523 - 809486
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  809523 actatcaaaaccattaaaccatacttatggtttcagta 809486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 809693 - 809656
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  809693 actatcaaaaccattaaaccatacttatggtttcagta 809656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 810064 - 810027
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  810064 actatcaaaaccattaaaccatacttatggtttcagta 810027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 54754358 - 54754395
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  54754358 actatcaaaaccattaaaccatacttatggtttcagta 54754395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 38010146 - 38010198
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  38010146 aagttatggtgcataagtcatttccttatgcaccatgcataaacacttcacaa 38010198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 55765486 - 55765538
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  55765486 aagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaa 55765538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 808987 - 808945
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||    
T  808987 agaacactatcaaaaccattaaaccatacttatggttttagta 808945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 54757723 - 54757765
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
T  54757723 agaacactatcaaaaccattataccatacttatggtttcagta 54757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 9561001 - 9560960
Alignment:
Q  253 agactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    ||||||||||||||||||||||||| ||| | ||||||||||    
T  9561001 agactatcaaaaccattaaaccatatttacgatttcagtaat 9560960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 13635786 - 13635741
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  13635786 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 13635741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 30357823 - 30357864
Alignment:
Q  178 cataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaa 30357864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 49492573 - 49492528
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  49492573 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 49492528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 54756723 - 54756760
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  54756723 actatcaaaaccattataccatacttatggtttcagta 54756760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 54756924 - 54756961
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  54756924 actatcaaaaccattataccatacttatggtttcagta 54756961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 54757527 - 54757564
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  54757527 actatcaaaaccattataccatacttatggtttcagta 54757564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 809352 - 809316
Alignment:
Q  256 ctatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  809352 ctatcaaaatcattaaaccatacttatggtttcagta 809316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 1701195 - 1701151
Alignment:
Q  357 aaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||| |||||||||||||||| |||| |||||||| |||||||||    
T  1701195 aaaccattacacaattatcttagttttacatacaacactatcaaa 1701151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 10472502 - 10472546
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaaca 211  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||    
T  10472502 aagttatggtgcataagtcatttccttatgcaccgtgcataaaca 10472546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 51367 - 51598
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccatt 269  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  51367 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaaaccattagacaattattttggtttctcatataagactatcaaaaccatt 51466  T
Q  270 aaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacaca 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  51467 aaaccataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaaccattacaca 51566  T
Q  370 attatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||||||||||||    
T  51567 attatcttggtttcacatacaagactatcaaa 51598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 51553 - 51629
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| |||||||||| |||||    
T  51553 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcggtaat 51629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 167 - 401
Target Start/End: Complemental strand, 6797446 - 6797212
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||    
T  6797446 aagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaaaattattagacaattattttggtttctcataaaagactatcaaaacc 6797347  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  6797346 attaaaccataattatggtttcagtaatagtttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaaccattac 6797247  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  6797246 acaattatcttggtttcacatacaagactatcaaa 6797212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 167 - 401
Target Start/End: Complemental strand, 45402931 - 45402697
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  45402931 aagttattatgcataagttatttccttatgcacccagcataaacactttacaaaaccattagactattattttggtttctcataaaagactatcaaaacc 45402832  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  45402831 attaaaccataattatggtttcaataataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaatcattac 45402732  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  45402731 acaattatcttggtttcacatacaagactatcaaa 45402697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 402
Target Start/End: Complemental strand, 21406055 - 21405857
Alignment:
Q  202 tgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttca 301  Q
    ||||||||||||| ||||||  |||| | |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21406055 tgcataaacacttcacaaaactatta-ataattattttggtttcttatagaagactatcaaaaccattaaaccataattatgatttcagtaataatttca 21405957  T
Q  302 atgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
     ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  21405956 gtgtataacatcttaatcattatttaaagtcatgtaataataataatttcatt-aaaaccattacataattatcttggtttcacatacaagactatcaaa 21405858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 12283282 - 12283398
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  ||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  12283282 ttacaaaaccattagacaattattttggtttcacattgaagactgtcaaaaccattaaatcatacttatggtttcagtaataatttcagtgtataacatc 12283381  T
Q  314 ttaatcattatttaaaa 330  Q
    |||||||||||||||||    
T  12283382 ttaatcattatttaaaa 12283398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 10564153 - 10564269
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  | ||||| |||||||||||||  |||| ||||||||||||||||||||||| ||||||||||     
T  10564153 ttacaaaaccattagacaattattttggtttcacattgtagactgtcaaaaccattaagtcatacttatggtttcagtaataatttcagtgtataacatt 10564252  T
Q  314 ttaatcattatttaaaa 330  Q
    |||||||||||||||||    
T  10564253 ttaatcattatttaaaa 10564269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 12283395 - 12283507
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| ||||| |||||||| |||||||| || | || ||| |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12283395 aaaaccattacacaattatcttggtttcacatacaatactgtcaaaatcattaaaccatacttatggtttcagtaataatttcagtgtataacatcttaa 12283494  T
Q  318 tcattatttaaaa 330  Q
    |||||||||||||    
T  12283495 tcattatttaaaa 12283507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 12283504 - 12283616
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| ||||| |||||||| |||||||| || | || ||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  12283504 aaaaccattacacaattatcttggtttcacatacaatactgtcaaaaccattaaaccatacttatggtttcggtaataatttcagtgtataacatcttaa 12283603  T
Q  318 tcattatttaaaa 330  Q
    |||||||||||||    
T  12283604 tcattatttaaaa 12283616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 12283079 - 12283162
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataat 297  Q
    |||||||| |||||||||||||| |||||||| || |||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  12283079 ttacaaaaccattagacaattatgttggtttcacatagaacactatcaaaaccattaaaccatacttatagtttcagtaataat 12283162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 45402742 - 45402666
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  45402742 aaaatcattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 45402666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 10564457 - 10564548
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtata 308  Q
    ||||| ||||| |||||  || ||||||| || | || ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  10564457 caaaaccattacacaatatttatggtttcacatacaatactatcaaaaccattaaaccatacttatggtttcagtcataatttcagtgtata 10564548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 10563830 - 10563908
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    ||||||||||| |||||||| |||||||| ||   || |||||||||||| |||||||||| |||||||||||||||||    
T  10563830 caaaatcattacacaattatcttggtttcacatttaatactatcaaaaccgttaaaccatacttatggtttcagtaata 10563908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 10564266 - 10564356
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtata 308  Q
    |||| ||||| ||| |||| |||||||| || | || |||||||||||||||||| |||| |||||||||||| |||||||||| ||||||    
T  10564266 aaaaccattacacatttatcttggtttcacatacaatactatcaaaaccattaaatcatacttatggtttcagaaataatttcagtgtata 10564356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 39007708 - 39007658
Alignment:
Q  169 gttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  39007708 gttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 39007658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 6797257 - 6797182
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | ||||||||||||||||||||||||| | |||||||||||||||    
T  6797257 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccat-actatggtttcagtaat 6797182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 16931963 - 16932007
Alignment:
Q  340 aataataatttcattaaaaactattacacaattatcttggtttca 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  16931963 aataataattttattaaaaactattacacaattatcttggtttca 16932007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 16937346 - 16937390
Alignment:
Q  340 aataataatttcattaaaaactattacacaattatcttggtttca 384  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  16937346 aataataattttattaaaaactattacacaattatcttggtttca 16937390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 34875494 - 34875546
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  34875494 aagttattatgcataagccatttccttatgcaccctgcataaacacttcacaa 34875546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 44141312 - 44141260
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  44141312 aagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaa 44141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 10564592 - 10564643
Alignment:
Q  257 tatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtata 308  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  10564592 tatcaaaaccattaaaccatacttatggtttcagtcataatttcagtgtata 10564643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 10564648 - 10564725
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    ||||| ||||| |||||  || ||||||| || | || ||||||||||||||||||||||| ||||||||||||||||    
T  10564648 caaaaccattacacaatatttatggtttcacatacaatactatcaaaaccattaaaccatacttatggtttcagtaat 10564725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 5757391 - 5757443
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||| ||||    
T  5757391 aagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaa 5757443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 10564401 - 10564452
Alignment:
Q  257 tatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtata 308  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||||    
T  10564401 tatcaaaaccattaaaccatacttatggtttcggtcataatttcagtgtata 10564452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 4721056 - 4721019
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  4721056 actatcaaaaccattaaaccatacttatggtttcagta 4721019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 10564266 - 10564311
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||    
T  10564266 aaaaccattacacatttatcttggtttcacatacaatactatcaaa 10564311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 12283395 - 12283440
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||    
T  12283395 aaaaccattacacaattatcttggtttcacatacaatactgtcaaa 12283440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 12283504 - 12283549
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||    
T  12283504 aaaaccattacacaattatcttggtttcacatacaatactgtcaaa 12283549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 46346777 - 46346725
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| || |||||||| |||| |||||||||| ||||    
T  46346777 aagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaa 46346725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 13420470 - 13420428
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||    
T  13420470 agaacactatcaaaaccattcaaccatacttatggtttcagta 13420428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 13420671 - 13420629
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
T  13420671 agaacactatcaaaaccattacaccatacttatggtttcagta 13420629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 16933305 - 16933260
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  16933305 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 16933260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 16938688 - 16938643
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  16938688 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 16938643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 24359871 - 24359928
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||| |||||||  ||||||||||| ||||||||||||| ||||| ||||||| ||||    
T  24359871 gggaaaagttatggtgcataagtcatttccttatgcaccgtgcatcaacacttcacaa 24359928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 48305261 - 48305293
Alignment:
Q  188 ttccttatgcaccctgcataaacactttacaaa 220  Q
    ||||||||||||| |||||||||||||||||||    
T  48305261 ttccttatgcaccgtgcataaacactttacaaa 48305293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 1612 - 1843
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccatt 269  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||| |||||||||||||    
T  1612 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaaaccattagacaattattttggtttctcataaaagaatatcaaaaccatt 1711  T
Q  270 aaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacaca 369  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  1712 aaaccataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataatactttcattaaaaaccattacaca 1811  T
Q  370 attatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||||||||||||    
T  1812 attatcttggtttcacatacaagactatcaaa 1843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 1798 - 1874
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  1798 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 1874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 209331 - 209565
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||| | |||||||||||||||    
T  209331 aagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaaacaattagacaattattttggtttctcatataagactatcaaaacc 209430  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  209431 attaaaccataattattgtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaaccattac 209530  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||||||| |||||||    
T  209531 acaattatcttggtttcacatacaagattatcaaa 209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 171513 - 171625
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccatt 269  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  171513 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaaaaccattagacaattattttggtttctcatataagactatcaaaaccatt 171612  T
Q  270 aaaccataattat 282  Q
    |||||||||||||    
T  171613 aaaccataattat 171625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 209520 - 209596
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||| ||||||||||||||||| ||| ||||||||||||||||    
T  209520 aaaaccattacacaattatcttggtttcacatacaagattatcaaaaccattaaactatacttatggtttcagtaat 209596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 162 - 402
Target Start/End: Complemental strand, 24024690 - 24024450
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatca 261  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||||    
T  24024690 gggagaagttattatgcataagtcaattccttatgcaccatgcataaacacttcacaaaaccattagacaattattttggtttctcatagaagattatca 24024591  T
Q  262 aaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaact 361  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||     
T  24024590 aaaccattaaaccataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaactatgtaacaataataatttcattaaaaacc 24024491  T
Q  362 attacacaattatcttggtttcacatacaagactatcaaat 402  Q
    ||||||||||||| || || |||||||||| ||||||||||    
T  24024490 attacacaattatgttagtatcacatacaaaactatcaaat 24024450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 264 - 401
Target Start/End: Original strand, 28056102 - 28056239
Alignment:
Q  264 accattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactat 363  Q
    |||||||||||||  |||| |||||||||||||||||| ||||||| || ||||||||||||||||  |||||| || ||||||||||||| ||||| ||    
T  28056102 accattaaaccatgcttattgtttcagtaataatttcagtgtataatattttaatcattatttaaacccatgtaccattaataatttcatttaaaaccat 28056201  T
Q  364 tacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  28056202 tacacaattatattggttttacatacaagactatcaaa 28056239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 28048244 - 28048325
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| || |||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||    
T  28048244 ttacaaaaccactagacaattagtttggtttcacatagaacactatcaaaaccattaaaccatacttatggtttcagtaata 28048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 30771316 - 30771409
Alignment:
Q  238 ttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagt-aataatttcaatgtataacatcttaatcattatttaaaa 330  Q
    |||||||| ||  ||||||| ||||||||||||| ||||| |||||||||||||  ||||||||| ||||||||||||||||||||||| ||||    
T  30771316 ttggtttcacattgaagactgtcaaaaccattaagccatacttatggtttcagtctataatttcagtgtataacatcttaatcattattaaaaa 30771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 30771407 - 30771491
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaa 302  Q
    |||| ||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||| ||||||||| |||||| |||||||    
T  30771407 aaaaccattagacaattattttggtttcacattgaagactgtcaaaaccattaagccatacttatggttttagtaatgatttcaa 30771491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 5098721 - 5098773
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5098721 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 5098773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 28056194 - 28056268
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||| |||||||| |||||||  || | |||||||||||||||||||||||||| ||||||||||||||    
T  28056194 aaaaccattacacaattatattggttttacatacaagactatcaaaaccattaaaccatacttatggtttcagta 28056268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 39548047 - 39548099
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  39548047 aagttattatacataagtcatttccttatgcaccctgcataaacacttcacaa 39548099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 13081921 - 13081869
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  13081921 aagttattatgcataagtcatttcattatgcaccctacataaacacttcacaa 13081869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 40853740 - 40853688
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||    
T  40853740 aagttattatgcataagccatttccttatgcatcctgcataaacacttcacaa 40853688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 21173710 - 21173668
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  21173710 agaacactatcaaaaccattaaaccatacttatggtttcagta 21173668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 27970565 - 27970607
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  27970565 agaacactatcaaaaccattaaaccatacttatggtttcagta 27970607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 44348295 - 44348258
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44348295 actatcaaaaccattaaaccatacttatggtttcagta 44348258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 44350819 - 44350782
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44350819 actatcaaaaccattaaaccatacttatggtttcagta 44350782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 25995291 - 25995343
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || |||||||||||| ||||||||| |||| ||||    
T  25995291 aagttattatgcataagacatttccttatgcactctgcataaatacttcacaa 25995343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 36636998 - 36636946
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| || |||||| ||||| ||||||||||| ||||    
T  36636998 aagttattatgcataagtcattttcttatgtaccctacataaacacttcacaa 36636946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 27970194 - 27970236
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  27970194 agaacactgtcaaaaccattaaaccatatttatggtttcagta 27970236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 28056699 - 28056741
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  28056699 agaacactgtcaaaaccattaaaccatatttatggtttcagta 28056741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 16142133 - 16142084
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||| ||| || |||||||||||| |||||||||||||| ||||    
T  16142133 ttattatgcacaagccatttccttatgcacgctgcataaacacttcacaa 16142084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 21173535 - 21173498
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  21173535 actatcaaaaccattaaatcatacttatggtttcagta 21173498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 27970364 - 27970401
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  27970364 agaacactatcaaaaccattaaaccatacttatggttt 27970401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 28056869 - 28056906
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  28056869 agaacactatcaaaaccattaaaccatacttatggttt 28056906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 30767577 - 30767614
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  30767577 agaacactatcaaaaccattaaaccatacttatggttt 30767614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 30771740 - 30771777
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  30771740 agaacactatcaaaaccattaaaccatacttatggttt 30771777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 4281849 - 4281797
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||| || ||| |||||||||| ||||    
T  4281849 aagttattatgcataagacatttccttatgtactctgtataaacacttcacaa 4281797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 44348496 - 44348464
Alignment:
Q  255 actatcaaaaccattaaaccataattatggttt 287  Q
    ||||||||||||||||||||||| |||||||||    
T  44348496 actatcaaaaccattaaaccatacttatggttt 44348464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 119207 - 119441
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  119207 aagttattatacataagtcatttctatatgcaccctgcataaacacttcacaaaaccattagacaattattttggtttctcatataagactatcaaaacc 119306  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  119307 attaaaccataattatggtttcagtaataatttcagtatataacatcttaatcattatttaaaactatgtaacaataataatttcattaaaaaccattac 119406  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  119407 acaattatcttggtttcacatacaagactatcaaa 119441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 119396 - 119472
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  119396 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 119472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 32232996 - 32233230
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  32232996 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaaaccattagacaattattttggtttctcatagaagactatcaaaacc 32233095  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    |||||||||||||||| ||||| |||||||||  | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  32233096 attaaaccataattatagtttcggtaataattcaagtgtatatcatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaatcattac 32233195  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  32233196 acaattatcttggtttcacatacaagactatcaaa 32233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 161 - 402
Target Start/End: Original strand, 41568830 - 41569069
Alignment:
Q  161 ggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatc 260  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||| |||||||||||      ||||||||| |||||||||||    
T  41568830 ggggagaagttattatgcataagtcaattccttatgcaccatgcataaatacttcacaaaaccattagacaat------ggtttctcatagaagactatc 41568923  T
Q  261 aaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatc----attatttaaaatcatgtaacaataataatttcattaa 356  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  41568924 aaaatcattaaaccataattacggtttcagtaataattttaatgtataacatcttaatcgatcattatttaaaatcatgtaacaataataatttcattaa 41569023  T
Q  357 aaactattacacaattatcttggtttcacatacaagactatcaaat 402  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||    
T  41569024 aaaccattacacaattatcttagtttcacatacaagactatgaaat 41569069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 32233185 - 32233261
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||||||||||||||    
T  32233185 aaaatcattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 32233261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 51452934 - 51453004
Alignment:
Q  321 ttatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaa 391  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| | ||||||    
T  51452934 ttatttaaaatcatgtaacaataataatttcattaaaaaccattacacaattattttagttttagatacaa 51453004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 40219381 - 40219300
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  40219381 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttcagtaata 40219300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 40219582 - 40219501
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  40219582 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttcagtaata 40219501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 40219783 - 40219702
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  40219783 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttcagtaata 40219702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 40219984 - 40219903
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  40219984 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttcagtaata 40219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 51682063 - 51682016
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  51682063 aagttattatgcataagtcatttccttatgcaccctgcataaacactt 51682016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 23755290 - 23755342
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  23755290 aagttattatgcataagacatttccttatgcaccctgcataaacacttcacaa 23755342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 47728393 - 47728445
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  47728393 aagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 47728445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 37319521 - 37319474
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  37319521 aagttattatgcataagtcattttcttatgcaccctgcataaacactt 37319474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 39195169 - 39195120
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacacttta 216  Q
    |||||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  39195169 aagttattatgcataagtcatttcctcatgcaccctgcatgaacacttta 39195120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 53594973 - 53595025
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || || |||||||||||||||||||||||| ||||    
T  53594973 aagttattatgcataagccattttcttatgcaccctgcataaacacttcacaa 53595025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 11974935 - 11974977
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  11974935 agaacactatcaaaaccattaaaccatacttatggtttcagta 11974977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 28300010 - 28299961
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||| ||||    
T  28300010 ttattatgcataagtcatttccttatgtaccatgcataaacacttcacaa 28299961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 9106272 - 9106324
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  9106272 aagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaa 9106324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 23699332 - 23699384
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || || ||||| |||||||||||||||||| ||||    
T  23699332 aagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 23717787 - 23717839
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || || ||||| |||||||||||||||||| ||||    
T  23717787 aagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23717839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 23736243 - 23736295
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || || ||||| |||||||||||||||||| ||||    
T  23736243 aagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23736295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 41192418 - 41192359
Alignment:
Q  160 tggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||| |||||||  ||||||||||| ||||||||||||| | ||||||||||| ||||    
T  41192418 tggggaaaagttatggtgcataagtcatttccttatgcaccgtacataaacacttcacaa 41192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 11975105 - 11975147
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||||||||||||| |||| ||||||||||||||    
T  11975105 agaacactatcaaaaccattaaatcatacttatggtttcagta 11975147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 11975275 - 11975317
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| |||| |||||||||    
T  11975275 agaacactatcaaaaccattaaaccatacttatagtttcagta 11975317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 11975445 - 11975487
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
T  11975445 agaacactatcaaaaccattataccatacttatggtttcagta 11975487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 26662599 - 26662554
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||| |||||||| || ||||||||||||| |||||||||||    
T  26662599 aagttattgtgcataagccatttccttatgcaccgtgcataaacac 26662554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 30947972 - 30947927
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  30947972 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 30947927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 33414074 - 33414029
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  33414074 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 33414029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 51846846 - 51846789
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||| |||||||  |||||||| || ||||||||||||| ||||||||||||| ||||    
T  51846846 gggaaaagttatggtgcataagccatttccttatgcaccgtgcataaacacttcacaa 51846789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 160 - 401
Target Start/End: Complemental strand, 7410 - 7169
Alignment:
Q  160 tggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactat 259  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||| ||||| ||||    
T  7410 tggggagaagttattatgcataaatcagatccttatgcaccctgcataaacacttcacaaaaccatttgataattattttggtttctcatagaaggctat 7311  T
Q  260 caaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaa 359  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  7310 caaaaccattaaatcataattatggtttcactaataatttcagtgtataacatcttaatcactatttaaaaccatgtaacaataataattttattaaaaa 7211  T
Q  360 ctattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  7210 ccattacacaattatcttggtttcacatacaagactatcaaa 7169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 7214 - 7138
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||| ||||||||||| ||||||||||||||||    
T  7214 aaaaccattacacaattatcttggtttcacatacaagactatcaaaacaattaaaccatacttatggtttcagtaat 7138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 13590472 - 13590706
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||||||||||    
T  13590472 aagttattatgcataagtcatttccttatgcaccctgcataaacactttacaaaaccattaaacaattattttggtctctcatataagactatcaaaacc 13590571  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    |||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  13590572 attaaaccataattatgggttcaataataatttgagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaatcattac 13590671  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||| |||||||||||||||||||||||    
T  13590672 acaattatcttcgtttcacatacaagactatcaaa 13590706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 20372213 - 20372436
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccatt 269  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||        
T  20372213 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaaaccattagacaattattttggtttctcatataagactatcaaaac---- 20372308  T
Q  270 aaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacaca 369  Q
        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  20372309 ----cataattatggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaaccattacaca 20372404  T
Q  370 attatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||||||||||||    
T  20372405 attatcttggtttcacatacaagactatcaaa 20372436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 5077509 - 5077351
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5077509 aagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaaaatcattagacaattattttggtttctcatagaagactatcaaaacc 5077410  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatt 325  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  5077409 attaaaccataagtatggtttcagtaataatttcagtgtataacatcttaatcattatt 5077351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 283 - 401
Target Start/End: Original strand, 20481214 - 20481332
Alignment:
Q  283 ggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggttt 382  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  20481214 ggtttcagtaataatttcagtgtataacatcttaatcattatttaaaaccatgtaacaataatactttcattaaaaaccattacacaattatcttggttt 20481313  T
Q  383 cacatacaagactatcaaa 401  Q
     ||||||||||||||||||    
T  20481314 tacatacaagactatcaaa 20481332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 13673899 - 13674011
Alignment:
Q  170 ttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccatt 269  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  13673899 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaaaaccattagacaattattttggtttctcatataagactatcaaaaccatt 13673998  T
Q  270 aaaccataattat 282  Q
    |||||||||||||    
T  13673999 aaaccataattat 13674011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 19845812 - 19845893
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  19845812 ttacaaaaccattagacaattagtttggtttcacatagaacactatcaaaaccattaaaccatacttatggtttctgtaata 19845893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 13590661 - 13590737
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||||||||| |||||||| || ||||| || | ||||||||||||||||||||| |||| ||||||||||||||||    
T  13590661 aaaatcattacacaattatcttcgtttcacatacaagactatcaaaaccattaaatcatacttatggtttcagtaat 13590737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 20372391 - 20372467
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||||||||||| |||||||||| |||||    
T  20372391 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaaccatacttatggtttcggtaat 20372467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 20481287 - 20481363
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||  || | |||||||||||||||||||||||||| ||||||||||||||||    
T  20481287 aaaaccattacacaattatcttggttttacatacaagactatcaaaaccattaaaccatacttatggtttcagtaat 20481363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 33097410 - 33097462
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33097410 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 33097462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 51801794 - 51801742
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  51801794 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 51801742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 37639346 - 37639398
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  37639346 aagttattatgcataagacatttccttatgcaccctgcataaacacttcacaa 37639398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 44260523 - 44260575
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  44260523 aagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaa 44260575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 35198242 - 35198195
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||    
T  35198242 aagttattatgcataagacatttccttatgcaccctgcataaacactt 35198195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 19846032 - 19846101
Alignment:
Q  332 catgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||| |||||||||||||||| ||||| |||||||  |||||||||||| ||||| || |||||||||    
T  19846032 catgtaccaataataatttcatttaaaaccattacacccttatcttggttttacatagaacactatcaaa 19846101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 31529726 - 31529674
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||| ||||    
T  31529726 aagttattatgcataagccatttccttatgcaccatgcataaacacttcacaa 31529674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 44688671 - 44688619
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||| ||||    
T  44688671 aagttatcatgcataagtcatttccttatgcacgctgcataaacacttcacaa 44688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 19846071 - 19846130
Alignment:
Q  233 ttattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||  || |||| ||||||||||||||||||||||| ||||||||||||||    
T  19846071 ttatcttggttttacatagaacactatcaaaaccattaaaccatacttatggtttcagta 19846130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 37223273 - 37223310
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37223273 actatcaaaaccattaaaccatacttatggtttcagta 37223310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 37223613 - 37223650
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37223613 actatcaaaaccattaaaccatacttatggtttcagta 37223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 37223783 - 37223820
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37223783 actatcaaaaccattaaaccatacttatggtttcagta 37223820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 37223953 - 37223990
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37223953 actatcaaaaccattaaaccatacttatggtttcagta 37223990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 51420350 - 51420394
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaaca 211  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  51420350 aagttattatgcataagtcaattctttatgcatcctgcataaaca 51420394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 28323402 - 28323347
Alignment:
Q  158 tttggggagaagttattatgcataagtcagttccttatgcaccctgcataaacact 213  Q
    |||||| | |||||||||||||||||||| ||  ||||||||||| ||||||||||    
T  28323402 tttgggcaaaagttattatgcataagtcatttttttatgcaccctccataaacact 28323347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 2741032 - 2741085
Alignment:
Q  158 tttggggagaagttattatgcataagtcagttccttatgcaccctgcataaaca 211  Q
    |||||||  |||||||||||||||||||| ||| ||||| || |||||||||||    
T  2741032 tttggggtaaagttattatgcataagtcatttctttatgtactctgcataaaca 2741085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 37223447 - 37223480
Alignment:
Q  259 tcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||| ||||||||||||||    
T  37223447 tcaaaaccattaaaccatacttatggtttcagta 37223480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 37224123 - 37224160
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  37224123 actatcaaaatcattaaaccatacttatggtttcagta 37224160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 49936998 - 49936953
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  49936998 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 49936953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 50351808 - 50351853
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  50351808 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 50351853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 11421599 - 11421651
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  11421599 aagttatggtgcataaatcatttccttatgcaccgtgcataaacacttcacaa 11421651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 30788353 - 30788393
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcata 207  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  30788353 aagttattatgcataagtcatttccttatgcagtctgcata 30788393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 450207 - 450440
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||| |    
T  450207 aagttattatgcataagtcatttccttatacaccttgcataaacacttcataaaaccattagacaattattttggtttctcatagaagactatcaaaatc 450306  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattac 366  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  450307 attaaaccataattatggtt-cagtaataattttagtgtataacatcttaatcattatttaaaacaatgtaacaataataatttcattaaaaaccattac 450405  T
Q  367 acaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||||||||||||||    
T  450406 acaattatcttggtttcacatacaagactatcaaa 450440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 450395 - 450471
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | ||||||||||||||||||||| |||| ||||| ||||||||||    
T  450395 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccattaaatcatacttatgatttcagtaat 450471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 188 - 401
Target Start/End: Original strand, 7851365 - 7851575
Alignment:
Q  188 ttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggttt 287  Q
    |||| |||||||||||||||||||| | |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7851365 ttccatatgcaccctgcataaacacgtcacaaaaccattagaaaattattttggtttctcatagaagactatcaaaaccattaaaccataattatggttt 7851464  T
Q  288 cagtaataatttcaatgtataacatcttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacat 387  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||    
T  7851465 cagtaataatttcaatgt---acatcttaatcattatttaaaaccatgtaaaaataataatttcattaaaaatcattacacaattatcttggttttacat 7851561  T
Q  388 acaagactatcaaa 401  Q
    ||||||||||||||    
T  7851562 acaagactatcaaa 7851575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 32556349 - 32556585
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatcaaaacc 266  Q
    |||||||||||||||||||| || ||||||||||||||||||||| || | ||||  |||||||||||||||| |||| ||| |||||| ||||||||||    
T  32556349 aagttattatgcataagtcattttcttatgcaccctgcataaacaattcagaaaacgattagacaattattttagtttttcatagaagattatcaaaacc 32556448  T
Q  267 attaaaccataattatggtttcagtaataatttcaatgtataac-atcttaatcattatttaaaatcatgtaacaataataatttcattaaaaact-att 364  Q
    | ||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  32556449 actaaacaataattatggtttcaataataatttcagtgtataactatcttaatcattatttaaaaccatgtaacaataataatttcattaaaaaatcatt 32556548  T
Q  365 acacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32556549 acacaattatcttggtttcacatgcaagactatcaaa 32556585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 401
Target Start/End: Complemental strand, 18762858 - 18762671
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||     
T  18762858 ttacaaaaccattagacaattattttggtttcacattgaagactgtcaaaaccattaaaccatacttatggtttcagtaataatttcagtgtataacatg 18762759  T
Q  314 ttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||| |||||||| ||   ||||||||||||    
T  18762758 ttaatcattatttaaaatcatgtaccaataataatttcatttaaaaccattagacaattattttggtttctcaatgaagactatcaaa 18762671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 18762716 - 18762604
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||| |||||| ||||||||||| |||||||||||||||    
T  18762716 aaaaccattagacaattattttggtttctcaatgaagactatcaaaatcattaaaccatacttattgtttcattaataatttcagtgtataacatcttaa 18762617  T
Q  318 tcattatttaaaa 330  Q
    |||||||||||||    
T  18762616 tcattatttaaaa 18762604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 18762607 - 18762495
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| ||||| ||| |||| ||| |||| || | || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  18762607 aaaaccattacacatttatcttgttttcacatacaatactatcaaaaccattaaaccatacttatggtttcagtaataatttcagtgtataacctcttaa 18762508  T
Q  318 tcattatttaaaa 330  Q
    |||||||||||||    
T  18762507 tcattatttaaaa 18762495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 27079996 - 27079919
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattatttt 239  Q
    ||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||  ||||||||||||||||    
T  27079996 gggagaagttattatgcataagtcattttcttatgcaccgtgcataaacacttcacaaaactattagacaattatttt 27079919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 32556540 - 32556611
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttca 289  Q
    |||||||||| |||||||| |||||||| ||   |||||||||||||||||||||||||| |||||||||||    
T  32556540 aaaatcattacacaattatcttggtttcacatgcaagactatcaaaaccattaaaccatatttatggtttca 32556611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 28123070 - 28123142
Alignment:
Q  223 cattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||| |||||||| ||||||||| || |||| |||||||||||||||||||||||  ||||||||| ||||||    
T  28123070 catttgacaattagtttggtttcacatagaacactatcaaaaccattaaaccatacatatggtttctgtaata 28123142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 7851530 - 7851603
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagt 291  Q
    |||||||||| |||||||| |||||||  || | ||||||||||||| |||||||||| | |||||||||||||    
T  7851530 aaaatcattacacaattatcttggttttacatacaagactatcaaaatcattaaaccacacttatggtttcagt 7851603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 28122930 - 28123004
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttc 288  Q
    |||||||| ||||||||||||| |||||||||  | |||| ||  |||||||||||||||||||  |||||||||    
T  28122930 ttacaaaaccattagacaattagtttggtttcatatagaacaccgtcaaaaccattaaaccatacatatggtttc 28123004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 16968082 - 16968037
Alignment:
Q  169 gttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    ||||||||||||||| || || ||||||||||||||||||||||||    
T  16968082 gttattatgcataagccattttcttatgcaccctgcataaacactt 16968037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 22038144 - 22038107
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22038144 actatcaaaaccattaaaccatacttatggtttcagta 22038107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 30908652 - 30908709
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||| |||||||  ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  30908652 gggaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaa 30908709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18611193 - 18611245
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||| || ||| |||||||| |||||||||||||| ||||    
T  18611193 aagttattatgcataagacatttctttatgcactctgcataaacacttcacaa 18611245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 4338681 - 4338634
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    ||||| ||||||||||| || || ||||||||||||||||||||||||    
T  4338681 aagttgttatgcataagccattttcttatgcaccctgcataaacactt 4338634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 28123519 - 28123578
Alignment:
Q  233 ttattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||  || |||| |||||||||||||||| |||||| ||||||||||||||    
T  28123519 ttatattggttttacatagaacactatcaaaaccattataccatacttatggtttcagta 28123578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 15034036 - 15034078
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
T  15034036 agaacactatcaaaaccattataccatacttatggtttcagta 15034078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 18762607 - 18762562
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||    
T  18762607 aaaaccattacacatttatcttgttttcacatacaatactatcaaa 18762562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 28123281 - 28123350
Alignment:
Q  332 catgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||| |||||||||||||||| ||||| |||||||  |||| ||||||| ||||  || |||||||||    
T  28123281 catgtaccaataataatttcatttaaaaccattacacccttatattggttttacatcgaacactatcaaa 28123350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 28123342 - 28123379
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  28123342 actatcaaaaccattataccatacttatggtttcagta 28123379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 28123488 - 28123549
Alignment:
Q  340 aataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||| ||||| |||||||  |||| ||||||| ||||| || |||||||||    
T  28123488 aataataatttcatttaaaaccattacacccttatattggttttacatagaacactatcaaa 28123549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 31216667 - 31216712
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  31216667 aagttatggtgcataagtcatttccttatgcaccgtgcataaacac 31216712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 18762498 - 18762422
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| ||   || ||||  ||||||||||||||||| |||| |||||||||||    
T  18762498 aaaaccattacacaattatcttggtttcacatgcaatactaaaaaaaccattaaaccatacttattgtttcagtaat 18762422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 18762498 - 18762458
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagacta 396  Q
    ||||| |||||||||||||||||||||||||| ||| ||||    
T  18762498 aaaaccattacacaattatcttggtttcacatgcaatacta 18762458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 22038345 - 22038313
Alignment:
Q  255 actatcaaaaccattaaaccataattatggttt 287  Q
    ||||||||||||||||||||||| |||||||||    
T  22038345 actatcaaaaccattaaaccatacttatggttt 22038313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 162 - 327
Target Start/End: Complemental strand, 44509118 - 44508953
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaaaatcattagacaattattttggtttctcacagaagactatca 261  Q
    |||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  44509118 gggagaagttattatgcataagtcagttccatatgcaccctgtagaaacacttcacaaaaccattagacaattattttgatttctcatagaagactatca 44509019  T
Q  262 aaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattattta 327  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  44509018 aaaccattaaaccataattatggtttcaataataatttcagtgtataacatcttaatcattattta 44508953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 17225380 - 17225461
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| |||||||||| ||||||    
T  17225380 ttacaaaaccattagacaattagtttggtttcacatagaacactatcaaaaccattaaaccatacttatggtttctgtaata 17225461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 40005568 - 40005649
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  40005568 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttcagtaata 40005649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 40005769 - 40005850
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| |||||||| |||| ||||||||| || |||| | |||||||||||||| |||||| |||||||||||||||||    
T  40005769 ttacaaaaccattagaccattagtttggtttcacatagaacagtatcaaaaccattagaccatacttatggtttcagtaata 40005850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 2522872 - 2522924
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  2522872 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 2522924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 40247346 - 40247294
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  40247346 aagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 40247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 40005970 - 40006045
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttca 289  Q
    |||||||| |||||||| |||| ||||||||| || |||| |||||||||||||||| |||||| |||||||||||    
T  40005970 ttacaaaaccattagaccattagtttggtttcacatagaacactatcaaaaccattagaccatacttatggtttca 40006045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 10443631 - 10443584
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactt 214  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||    
T  10443631 aagttattatgcataagccatttccttatgcaccctgcataaacactt 10443584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 12355427 - 12355479
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||| ||||    
T  12355427 aagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaa 12355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 44428235 - 44428286
Alignment:
Q  3 tttgtgtgactgataatgctacttttgttcctccggtttaaggaaagtgaag 54  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||    
T  44428235 tttgtgtgactgatagtgctactgttgttcctctggtttaaggaaagagaag 44428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 17057632 - 17057590
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  17057632 agaacactatcaaaaccattaaaccatacttatggtttcagta 17057590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 17225658 - 17225700
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  17225658 agaacactatcaaaaccattaaaccatacttatggtttcagta 17225700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 17590593 - 17590635
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  17590593 agaacactatcaaaaccattaaaccatacttatggtttcagta 17590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 40006167 - 40006217
Alignment:
Q  239 tggtttctcacagaagactatcaaaaccattaaaccataattatggtttca 289  Q
    ||||||| || |||| ||||||||||||||||||||||| |||||||||||    
T  40006167 tggtttcacatagaacactatcaaaaccattaaaccatacttatggtttca 40006217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 9852270 - 9852327
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||| |||||||  ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  9852270 gggaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaa 9852327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 13526741 - 13526680
Alignment:
Q  158 tttggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||||||||| || ||||||||| || |||||||||||||| ||||    
T  13526741 tttggggcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaa 13526680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 13616276 - 13616215
Alignment:
Q  158 tttggggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||||||||||| || ||||||||| || |||||||||||||| ||||    
T  13616276 tttggggcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaa 13616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 34648194 - 34648137
Alignment:
Q  162 gggagaagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||| |||||||  ||||||||||| ||||||||||||| ||||||||||||| ||||    
T  34648194 gggaaaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaa 34648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 23396491 - 23396534
Alignment:
Q  176 tgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||| || ||||||||||||| ||||||||||||||||||    
T  23396491 tgcataagccatttccttatgcaccgtgcataaacactttacaa 23396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 40006097 - 40006131
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttca 289  Q
    ||||||||||||||||||||||| |||||||||||    
T  40006097 actatcaaaaccattaaaccatacttatggtttca 40006131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 40006124 - 40006174
Alignment:
Q  239 tggtttctcacagaagactatcaaaaccattaaaccataattatggtttca 289  Q
    ||||||| || |||| |||||||||||||||| |||||| |||||||||||    
T  40006124 tggtttcacatagaacactatcaaaaccattacaccatacttatggtttca 40006174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 17057425 - 17057388
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  17057425 actatcaaaaccattcaaccatacttatggtttcagta 17057388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 17225602 - 17225671
Alignment:
Q  332 catgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||| |||||||||||||| | ||||| |||||||  ||| |||||||| ||||| || |||||||||    
T  17225602 catgtaccaataataatttcacttaaaaccattacacccttaacttggttttacatagaacactatcaaa 17225671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 17590800 - 17590837
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  17590800 actatcaaaaccattcaaccatacttatggtttcagta 17590837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 30413919 - 30413964
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacac 212  Q
    |||||||  ||||||||||| ||||||||||||| |||||||||||    
T  30413919 aagttatgctgcataagtcatttccttatgcaccgtgcataaacac 30413964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 15181795 - 15181847
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||||||     ||||||||||||||||||||||||||| ||||    
T  15181795 aagttattatgcataatatgtttccttatgcaccctgcataaacacttcacaa 15181847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 15227035 - 15227087
Alignment:
Q  167 aagttattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    |||||||  ||||||||| | ||||||||||||| ||||||||||| ||||||    
T  15227035 aagttatggtgcataagttatttccttatgcaccgtgcataaacacattacaa 15227087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28698651 - 28698603
Alignment:
Q  158 tttggggagaagttattatgcataagtcagttccttatgcaccctgcat 206  Q
    |||||||  ||||||||||||||||| || || ||||||||||||||||    
T  28698651 tttggggcaaagttattatgcataagccattttcttatgcaccctgcat 28698603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 30651958 - 30652006
Alignment:
Q  171 tattatgcataagtcagttccttatgcaccctgcataaacactttacaa 219  Q
    ||||||||||||   | ||||||||||||||||||||||||||| ||||    
T  30651958 tattatgcataatctatttccttatgcaccctgcataaacacttcacaa 30652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 401
Target Start/End: Original strand, 409 - 596
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||| ||||||||| ||    |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||     
T  409 ttacaaaaccattagacaattactttggtttcacattagagactatcaaaaccatgaaaccatacttatggtttcagtaataatttcagtgtataacatg 508  T
Q  314 ttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||| |||||  |||||||||||| ||| ||||| | || | |||||| ||||||||||||  |||||| |||||    
T  509 ttaatcattatttaaaaccatgtcccaataataattttatttaaaaccactagataattattttggtttcacattgaagactttcaaa 596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 226 - 397
Target Start/End: Original strand, 559 - 722
Alignment:
Q  226 tagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaatcattatt 325  Q
    |||| ||||||||||||||| ||  ||||||| ||||| | ||||||||||| |||||||||||||||||||||||        ||||||||||||||||    
T  559 tagataattattttggtttcacattgaagactttcaaa-ctattaaaccatacttatggtttcagtaataatttcag-------catcttaatcattatt 650  T
Q  326 taaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactat 397  Q
    ||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  651 taaaaccatgtaccaataataatttcatttaaaaccattacacaattatcttggtttgacatacaagactat 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 21 - 102
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||    
T  21 ttacaaaaccattagacaattattttggtttcacatagaacactatcaaaaccattaaaccatacttatggtttcagtaata 102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 681 - 793
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaa 317  Q
    |||| ||||| |||||||| |||||||  || | |||||||| |||| |||||||| ||| ||||| ||||||||||||||||| |||||||||||||||    
T  681 aaaaccattacacaattatcttggtttgacatacaagactataaaaaacattaaacgatacttatgatttcagtaataatttcagtgtataacatcttaa 780  T
Q  318 tcattatttaaaa 330  Q
    |||||||||||||    
T  781 tcattatttaaaa 793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 790 - 835
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  790 aaaaccattacacaattatcttggtttcacatacaagactatcaaa 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 790 - 865
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaat 294  Q
    |||| ||||| |||||||| |||||||| || | |||||||||||||||||| ||||||| ||||||||||||||||    
T  790 aaaaccattacacaattatcttggtttcacatacaagactatcaaaaccatt-aaccatacttatggtttcagtaat 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 162 - 220
Alignment:
Q  224 attagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattat 282  Q
    ||||||||||||||||  |||| || | ||| |||||||||||||||||||| ||||||    
T  162 attagacaattatttttctttcacatacaagtctatcaaaaccattaaaccacaattat 220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 401
Target Start/End: Complemental strand, 39325 - 39141
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  ||| | |||||||||||||||||||||  |||||||||||||||||||||| || ||||||||    
T  39325 ttacaaaaccattagacaattattttggtttcacattgaaaattatcaaaaccattaaaccatacgtatggtttcagtaataatttcagtgcataacatc 39226  T
Q  314 ttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||||| ||| ||    ||||||  |||||   ||| ||||||||||||||||||||| |||||||| |||||||||    
T  39225 ttaatcattatttaaaaccat-tatttttaataaaatcatt--gaaccattacacaattatcttggttttacatacaacactatcaaa 39141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 39554 - 39473
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||| ||||||||| || |||| ||||||||||| ||||||||||| |||||||||||||||||    
T  39554 ttacaaaaccattagacaattagtttggtttcacatagaacactatcaaaactattaaaccatacttatggtttcagtaata 39473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 39931 - 39850
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||| ||||||||| || |||| |  |||||||||||||||||||  | |||||||||||||||    
T  39931 ttacaaaaccattagacaattagtttggtttcacatagaacataatcaaaaccattaaaccatgttgatggtttcagtaata 39850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 39181 - 39112
Alignment:
Q  223 cattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||| |||||||| |||||||  || | || |||||||||| |||||||||||| ||||||||||||||    
T  39181 cattacacaattatcttggttttacatacaacactatcaaaatcattaaaccatacttatggtttcagta 39112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 38957 - 38883
Alignment:
Q  218 aaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||| ||||| |||| ||||| || |||| |||||||||||||||||||| || | | ||||||||||    
T  38957 aaaaccattaggcaattctttttgtttcacatagaacactatcaaaaccattaaaccttactcacggtttcagta 38883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 214 - 401
Target Start/End: Original strand, 168514 - 168698
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||  |||||||||||||||||||||| || ||||||||    
T  168514 ttacaaaaccattagacaattattttggtttcacattgaaaactatcaaaaccattaaaccatacgtatggtttcagtaataatttcagtgcataacatc 168613  T
Q  314 ttaatcattatttaaaatcatgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||||||||| || ||| ||    ||||||   ||||  |||| ||||| ||||||||||||||| |||||||| |||||||||    
T  168614 ttaatcattatttataaccat-tatttttaataaaaccatt--aaaccattacgcaattatcttggttttacatacaacactatcaaa 168698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 168320 - 168401
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||| ||||| ||||||||| || |||| |||||||||||||||||| |||| |||||||||||||||||    
T  168320 ttacaaaaccattagaaaattagtttggtttcacatagaacactatcaaaaccattaaatcatacttatggtttcagtaata 168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 168665 - 168727
Alignment:
Q  230 caattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||| |||||||  || | || ||||||||||||||||||||||| ||||||||||||||    
T  168665 caattatcttggttttacatacaacactatcaaaaccattaaaccatacttatggtttcagta 168727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 16310 - 16194
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||| ||||||||||||||||| ||  ||||||| ||||||||||||| ||||| |||| |||| ||||||||||||| |||||||||||    
T  16310 ttacaaaaccattacacaattattttggtttcacattgaagactgtcaaaaccattaagccatacttatagttttagtaataatttcagtgtataacatc 16211  T
Q  314 ttaatcattatttaaaa 330  Q
    |||||||||||||||||    
T  16210 ttaatcattatttaaaa 16194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 22874 - 22770
Alignment:
Q  219 aaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatcttaat 318  Q
    ||||||||| ||||||||||||||||| || | || |||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||  |||    
T  22874 aaatcattacacaattattttggtttcacatacaatactatcaaaatcattaaaccatacttatggtttcagtaataatttcagtggataacatcaaaat 22775  T
Q  319 catta 323  Q
    |||||    
T  22774 catta 22770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 16182 - 16106
Alignment:
Q  233 ttattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataa 309  Q
    ||||||||||||| || | || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  16182 ttattttggtttcacatacaatactatcaaaaccattaaaccatacttatggtttcagtaataatttcagtgtataa 16106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 22680 - 22584
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    ||||| ||||| ||| |||| |||||||| || | || ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  22680 caaaaccattacacatttatcttggtttcacatacaatactatcaaaaccattaaaccatacttatggtttcagtaataattttagtgtataacatc 22584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 22780 - 22680
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataa----ttatggtttcagtaataatttcaatgtataacat 312  Q
    ||||||||||| ||| |||| |||||||| || | || ||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||    
T  22780 caaaatcattacacatttatcttggtttcacatacaatactatcaaaaccattaaaccataaatacttatggtttcagtaataatttcagtgtataacat 22681  T
Q  313 c 313  Q
    |    
T  22680 c 22680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 22931 - 22877
Alignment:
Q  258 atcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacat 312  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22931 atcaaaaccattaaaccatacttatggtttcagtaataatttcagtgtataacat 22877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Complemental strand, 16589 - 16511
Alignment:
Q  217 caaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    ||||| ||||| ||||| || |||||||| ||   || ||||| ||||||||||||||||| |||||||||||||||||    
T  16589 caaaaccattacacaataatcttggtttcacatttaatactattaaaaccattaaaccatacttatggtttcagtaata 16511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 22679 - 22634
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||    
T  22679 aaaaccattacacatttatcttggtttcacatacaatactatcaaa 22634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 22773 - 22734
Alignment:
Q  362 attacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  22773 attacacatttatcttggtttcacatacaatactatcaaa 22734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 22869 - 22830
Alignment:
Q  362 attacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  22869 attacacaattattttggtttcacatacaatactatcaaa 22830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 16101 - 16056
Alignment:
Q  356 aaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||| |||||||| |||||||||||||| |||||| |||||||||    
T  16101 aaaaccattacacatttatcttggtttcagatacaatactatcaaa 16056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 10636 - 10752
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaataatttcaatgtataacatc 313  Q
    |||||||| ||||||| ||||||||||||||| ||  ||| ||||||||||||||||||| |||  |||||||||||||||||||||| || ||||||||    
T  10636 ttacaaaaccattagaaaattattttggtttcacattgaaaactatcaaaaccattaaactatacgtatggtttcagtaataatttcagtgcataacatc 10735  T
Q  314 ttaatcattatttaaaa 330  Q
    ||||||||||| |||||    
T  10736 ttaatcattatataaaa 10752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 10432 - 10513
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||||| ||||||||| || |||| |||| |||||||||||||||||| |||||||||||||||||    
T  10432 ttacaaaaccattagacaattagtttggtttcacatagaacactaccaaaaccattaaaccatacttatggtttcagtaata 10513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 10055 - 10136
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||||||| | ||||||||| || |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  10055 ttacaaaaccattagacaataagtttggtttcacatagaacactatcaaaaccattaaaccatacttatggtttcaataata 10136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 10762 - 10831
Alignment:
Q  223 cattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||| |||||||| |||||||  || | || ||||||||||||||||||||||| ||||||||||||||    
T  10762 cattacacaattatcttggttttacatacaacactatcaaaaccattaaaccatacttatggtttcagta 10831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 10758 - 10802
Alignment:
Q  357 aaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||    
T  10758 aaaccattacacaattatcttggttttacatacaacactatcaaa 10802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 6371 - 6450
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||||||| ||||||| |||||||||  |||| || |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  6371 ttacaaaaccattagataattatttt--tttcacatagaacactatcaaaaccattaaaccatacttatggtttcaataata 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 1156 - 1228
Alignment:
Q  223 cattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagtaata 295  Q
    |||| |||||||| ||||||||| || |||| |||||||||||||||||||||||  ||||||||| ||||||    
T  1156 catttgacaattagtttggtttcacatagaacactatcaaaaccattaaaccatacatatggtttctgtaata 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 1016 - 1090
Alignment:
Q  214 ttacaaaatcattagacaattattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttc 288  Q
    |||||||| ||||||||||||| |||||||||  | |||| ||  |||||||||||||||||||  |||||||||    
T  1016 ttacaaaaccattagacaattagtttggtttcatatagaacaccgtcaaaaccattaaaccatacatatggtttc 1090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 1566 - 1635
Alignment:
Q  332 catgtaacaataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    |||||| |||||||||||||||| ||||| |||||||  |||| ||||||| ||||| || |||||||||    
T  1566 catgtaccaataataatttcatttaaaaccattacacccttatattggttttacatagaacactatcaaa 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 1804 - 1863
Alignment:
Q  233 ttattttggtttctcacagaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| |||||||  || |||| |||||||||||||||| |||||| ||||||||||||||    
T  1804 ttatattggttttacatagaacactatcaaaaccattataccatacttatggtttcagta 1863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 1773 - 1834
Alignment:
Q  340 aataataatttcattaaaaactattacacaattatcttggtttcacatacaagactatcaaa 401  Q
    ||||||||||||||| ||||| |||||||  |||| ||||||| ||||| || |||||||||    
T  1773 aataataatttcatttaaaaccattacacccttatattggttttacatagaacactatcaaa 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 5931 - 5973
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  5931 agaacactatcaaaaccattaaaccatacttatggtttcagta 5973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 8906 - 8864
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||    
T  8906 agaacactatcaaaaccattcaaccatacttatggtttcagta 8864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 126298 - 126256
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  126298 agaacactatcaaaaccattaaaccatacttatggtttcagta 126256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 126468 - 126426
Alignment:
Q  250 agaagactatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  126468 agaacactatcaaaaccattaaaccatatttatggtttcagta 126426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 128616 - 128579
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  128616 actatcaaaaccattaaaccatacttatggtttcagta 128579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 19721 - 19758
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19721 actatcaaaaccattaaaccatacttatggtttcagta 19758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 28835 - 28872
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  28835 actatcaaaaccattaaaccatacttatggtttcagta 28872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 30981 - 31018
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30981 actatcaaaaccattaaaccatacttatggtttcagta 31018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 33430 - 33393
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  33430 actatcaaaaccattaaaccatacttatggtttcagta 33393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 33940 - 33903
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  33940 actatcaaaaccattaaaccatacttatggtttcagta 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 34110 - 34073
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  34110 actatcaaaaccattaaaccatacttatggtttcagta 34073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 19385 - 19418
Alignment:
Q  259 tcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||| ||||||||||||||    
T  19385 tcaaaaccattaaaccatacttatggtttcagta 19418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 19551 - 19588
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  19551 actatcaaaaccattaaatcatacttatggtttcagta 19588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 28665 - 28702
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  28665 actatcaaaatcattaaaccatacttatggtttcagta 28702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 33600 - 33563
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  33600 actatcaaaaccattaaatcatacttatggtttcagta 33563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 34280 - 34243
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  34280 actatcaaaaccattaaaccacacttatggtttcagta 34243  T

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Target: scaffold0144; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 34616 - 34583
Alignment:
Q  259 tcaaaaccattaaaccataattatggtttcagta 292  Q
    ||||||||||||||||||| ||||||||||||||    
T  34616 tcaaaaccattaaaccatacttatggtttcagta 34583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 310 - 347
Alignment:
Q  255 actatcaaaaccattaaaccataattatggtttcagta 292  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  310 actatcaaaaccattataccatacttatggtttcagta 347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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