View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_67 (Length: 418)
Name: NF8908_low_67
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 41142825 - 41143219
Alignment:
| Q |
1 |
atttattatataaaaatcttatcctaaactaatacttatactagttaatgttatttacaacttgcacgtgtattgtatactccaaaaacaaaaatatgtt |
100 |
Q |
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| T |
41142825 |
atttattatataaaaatcttatcctaaactaatacttatacttgttaatgttatttacaacttgcacgtgtattgtatactccaaaaacaaaaatatgtt |
41142924 |
T |
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| Q |
101 |
ttcctcaatggtaaaatgctcacatcatggaacatgcattcggattttcatcactaaacatttgtggaggaggttgatttggatgcaagtaaaactgagg |
200 |
Q |
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| T |
41142925 |
ttcctcaatggtaaaatgctcacatcatggaacaagcattcggattttcatcactaaacatttgtggaggaggttgatttggatgcaagtaaaactgagg |
41143024 |
T |
|
| Q |
201 |
ttgctgatattgatattgaggttccaccatatgcccaccttggccttgatgattcacataattataatcatacccttgttggtgttggttcacataattg |
300 |
Q |
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| T |
41143025 |
ttgctgatattgatattgaggttccaccatatgcccaccttggccttgatgattcacataattataatcatacccttgttggtgttggttcgcataattg |
41143124 |
T |
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| Q |
301 |
taattatacccttcttgattcacataattataattgtgcacttgttgattcgaataccctggctgaacctgcatcgcgtagttactactactact |
395 |
Q |
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| T |
41143125 |
taattatacccttcttgattcacataattataattgtgcacttgttgattcgaataccctggctgaacctgcatcgcgtagttactactactact |
41143219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 40787064 - 40787101
Alignment:
| Q |
130 |
gaacatgcattcggattttcatcactaaacatttgtgg |
167 |
Q |
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| T |
40787064 |
gaacaagcattaggattttcatcactaaacatttgtgg |
40787101 |
T |
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