View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_68 (Length: 418)
Name: NF8908_low_68
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 18099808 - 18100196
Alignment:
| Q |
18 |
gacaaaactcaaacagacatctctgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgtagtag |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18099808 |
gacaaaactcaaacagacatctttgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgtagtag |
18099907 |
T |
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| Q |
118 |
acacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaagggtaaagatggtgcctcactactacttgtgtgatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
18099908 |
acacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaacggtgaagatggtgcctcactactacttgtgtgatcaa |
18100007 |
T |
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| Q |
218 |
attgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcgtgtggatgagcactgtacattactgcacgtaacactgctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18100008 |
attgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcatgtggatgagcactgtacattactgcacgtaacactgctga |
18100107 |
T |
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| Q |
318 |
tactgttggtatatacaatgtcttgttcttccctaatagccatgttagtgccatcaattgacaatcccggttgtacatttttctttctc |
406 |
Q |
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| T |
18100108 |
tactgttggtatatacaatgtcttgttcttccctaacagccatgttaatgccatcaattgacaatcccggttgtacatttttctttctc |
18100196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 37857416 - 37857804
Alignment:
| Q |
18 |
gacaaaactcaaacagacatctctgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgtagtag |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37857416 |
gacaaaactcaaacagacatctttgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgtagtag |
37857515 |
T |
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| Q |
118 |
acacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaagggtaaagatggtgcctcactactacttgtgtgatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
37857516 |
acacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaacggtgaagatggtgcctcactactacttgtgtgatcaa |
37857615 |
T |
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| Q |
218 |
attgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcgtgtggatgagcactgtacattactgcacgtaacactgctga |
317 |
Q |
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| T |
37857616 |
attgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcatgtggatgagcactgtacattactgcacgtaacactgctga |
37857715 |
T |
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| Q |
318 |
tactgttggtatatacaatgtcttgttcttccctaatagccatgttagtgccatcaattgacaatcccggttgtacatttttctttctc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37857716 |
tactgttggtatatacaatgtcttgttcttccctaacagccatgttaatgccatcaattgacaatcccggttgtacatttttctttctc |
37857804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 21101023 - 21101114
Alignment:
| Q |
226 |
gaatcaacggctaagggcatgttctcttggtctggactacactttatatcgtgtggatgagcactgtacattactgcacgtaacactgctga |
317 |
Q |
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|||||||||||||| |||||||| ||||| || |||||||||||| || ||||| || ||||| ||||| | ||||||||| |||||||| |
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| T |
21101023 |
gaatcaacggctaatggcatgttttcttgatcaggactacactttgattcatgtgggtgtgcactatacatcattgcacgtaaaactgctga |
21101114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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