View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8908_low_75 (Length: 392)

Name: NF8908_low_75
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8908_low_75
NF8908_low_75
[»] chr7 (2 HSPs)
chr7 (179-377)||(22529739-22529938)
chr7 (1-39)||(22530078-22530116)
[»] chr1 (4 HSPs)
chr1 (1-39)||(23633226-23633264)
chr1 (1-36)||(9132478-9132513)
chr1 (1-36)||(18514728-18514763)
chr1 (1-36)||(41137958-41137994)
[»] chr5 (1 HSPs)
chr5 (1-36)||(29496978-29497013)
[»] scaffold0281 (1 HSPs)
scaffold0281 (1-36)||(786-821)
[»] chr4 (2 HSPs)
chr4 (1-36)||(19612887-19612922)
chr4 (1-36)||(25127248-25127283)
[»] chr3 (2 HSPs)
chr3 (1-36)||(18694578-18694613)
chr3 (1-36)||(18710097-18710132)
[»] chr6 (1 HSPs)
chr6 (2-32)||(9547844-9547874)
[»] scaffold0498 (1 HSPs)
scaffold0498 (1-34)||(9883-9916)
[»] chr2 (1 HSPs)
chr2 (3-36)||(27401657-27401690)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 179 - 377
Target Start/End: Complemental strand, 22529938 - 22529739
Alignment:
Q  179 gttaaatacttatcaatcagtttcttacatcttacaataacaataatcactttatcatcattattaattattactattatttttaaagtattttaaatct 278  Q
    |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22529938 gttaaatacttatcgatcagtttcttacatctaacgataacaataatcactttatcatcattattaattattactattatttttaaagtattttaaatct 22529839  T
Q  279 caaatcat-tgtttgctctacctaaaagttttcgatttcaaaagtgaagataaaaagtcttgacgcacctataaacttggtattgagtgagttagatact 377  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22529838 caaatcatctgtttgctctacctaatagttttcgatttcaaaagtgaaaataaaaagtcttgacgcacctataaacttggtattgagtgagtcagatact 22529739  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22530116 - 22530078
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgacatct 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22530116 atgactcaacaatgaacatctttatatgactcgacatct 22530078  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23633264 - 23633226
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgacatct 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23633264 atgactcaacaatgcacatctttatatgactcgacatct 23633226  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9132513 - 9132478
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9132513 atgactcaacaatgcacatctttatatgactcgaca 9132478  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18514763 - 18514728
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18514763 atgactcgacaatgcacatctttatatgactcgaca 18514728  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41137994 - 41137958
Alignment:
Q  1 atgactcaacaa-tgcacatctttatatgactcgaca 36  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41137994 atgactcaacaaatgcacatctttatatgactcgaca 41137958  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29497013 - 29496978
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29497013 atgactcaacaatgcacatctttatatgactcgaca 29496978  T

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Target: scaffold0281 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 786 - 821
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  786 atgactcgacaatgcacatctttatatgactcgaca 821  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19612922 - 19612887
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19612922 atgactcaacaatgcacatctttctatgactcgaca 19612887  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25127283 - 25127248
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25127283 atgactcgacaatgcacatctttatatgactcgaca 25127248  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18694613 - 18694578
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18694613 atgactcgacaatgcacatctttatatgactcgaca 18694578  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18710132 - 18710097
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcgaca 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18710132 atgactcgacaatgcacatctttatatgactcgaca 18710097  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 9547844 - 9547874
Alignment:
Q  2 tgactcaacaatgcacatctttatatgactc 32  Q
    |||||||||||||||||||||||||||||||    
T  9547844 tgactcaacaatgcacatctttatatgactc 9547874  T

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Target: scaffold0498 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9883 - 9916
Alignment:
Q  1 atgactcaacaatgcacatctttatatgactcga 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  9883 atgactcaacaatgcacatctttatgtgactcga 9916  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 27401690 - 27401657
Alignment:
Q  3 gactcaacaatgcacatctttatatgactcgaca 36  Q
    |||||||||||| |||||||||||||||||||||    
T  27401690 gactcaacaatgtacatctttatatgactcgaca 27401657  T

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