View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_76 (Length: 385)
Name: NF8908_low_76
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 39170468 - 39170833
Alignment:
| Q |
1 |
tccattatttaattaaaacaatgggaaagttagtctatttattgcaagtggacataatggttttaaggaaaatcataataagtggtcttggatctgagat |
100 |
Q |
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| T |
39170468 |
tccattatttaattaaaacaatgggaaagttagtctatttattgcaagtggacataatggttttaaggaaaatcataataagtggtcttggatctgagat |
39170567 |
T |
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| Q |
101 |
tacgaacaatatcaaaataaggaagggactaatctgaattgcttataatttagttgcctctaacacatgatctctttatttggaaaattgtccttattag |
200 |
Q |
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| T |
39170568 |
tacgaacaatatcaaaataaggaagagactaatctgaattgcttataatttagttgcctctgacacatgatctctttatttggaaaattgtctttattag |
39170667 |
T |
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| Q |
201 |
tggcagacctgctaaaacctaaaccgatcgaataggatgatgtcctcaacatgcatctccacattttctatactatagtcagcagcagcactatgtgtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170668 |
tggcagacctgctaaaacctaaaccgatcgaataggatgatgtcctcaacatgcatctccacattttctatactatagtcagcagcagcactatgtgtgt |
39170767 |
T |
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| Q |
301 |
attcaaataaataaacataacctaaaaatcataaattcaattactttgtacttgtaccggtctctatt |
368 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39170768 |
attcaaataaataaac--aacctaaaaatcataaattcaattactttgaacttgtaccggtctctatt |
39170833 |
T |
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