View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_84 (Length: 367)
Name: NF8908_low_84
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 52 - 352
Target Start/End: Complemental strand, 26268072 - 26267772
Alignment:
| Q |
52 |
catatgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttg |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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| T |
26268072 |
catatgcatgtgattaattatatttacttcacaattcattcatcttttgaattcatagaatattatttaagaatgactaatctactttcattattctttg |
26267973 |
T |
|
| Q |
152 |
tcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26267972 |
tcatgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatt |
26267873 |
T |
|
| Q |
252 |
tactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgctgatgtc |
351 |
Q |
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| T |
26267872 |
tactattcctaatttaagtttgagaggttacgaagtaattgataacatcaaagaagagctagaaaagaaagatcccgatgtggtttcttgtgctgatgtc |
26267773 |
T |
|
| Q |
352 |
c |
352 |
Q |
| |
|
| |
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|
| T |
26267772 |
c |
26267772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 26265501 - 26265338
Alignment:
| Q |
55 |
atgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtca |
154 |
Q |
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|||| ||||| |||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
26265501 |
atgcctgtgactaattacatttacttcacaattcatacatcttttgaattcatagaatatcatttaagaatgactaatctactttcattgttctttgtca |
26265402 |
T |
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| Q |
155 |
tgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
218 |
Q |
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| T |
26265401 |
caagaatgatattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactata |
26265338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 26264680 - 26264557
Alignment:
| Q |
227 |
tgtagtagttcaagctgaagtcatttactattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatct |
326 |
Q |
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|||||||||||| ||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| |||||||| |||| |||||||||||||| ||| |
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| T |
26264680 |
tgtagtagttcatgctcaagccatttactgctcctaatttgagtttaagaggctatgaagtaattgttaacatcagagaatagctagaaaagaaatgtct |
26264581 |
T |
|
| Q |
327 |
cgctgtagtttcttgtgctgatgt |
350 |
Q |
| |
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| ||| ||||| ||||||||||| |
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| T |
26264580 |
tggtgtggtttcgtgtgctgatgt |
26264557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 26264793 - 26264699
Alignment:
| Q |
85 |
attcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtcatgagaatgacattgatttgtttcaaa |
180 |
Q |
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| T |
26264793 |
attcattcatcttttaaattt-tacaagatcatttaaaaatgactaatatactttcactgttctttgtcatgggaatgacattgacttgtttcaaa |
26264699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26267771 - 26267738
Alignment:
| Q |
1 |
tagccatggcttctaagataaaatattctttaaa |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26267771 |
tagccatggcttctaagataaaatattctttaaa |
26267738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 57
Target Start/End: Complemental strand, 26267731 - 26267700
Alignment:
| Q |
26 |
ttctttaaaatcttctttaatcttttcatatg |
57 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26267731 |
ttctttaaaatcttctttaatcttttcatatg |
26267700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 55 - 350
Target Start/End: Original strand, 23574279 - 23574570
Alignment:
| Q |
55 |
atgcatgtgattaattatatttacttcacaattcattcatcttttcaattcatagaatattatttaagaatggctaatctaatttcattgttctttgtca |
154 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| ||||||||| || || |||||||| |||||||||||||||||| ||||| |||||||||| |
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| T |
23574279 |
atgcatgtgactaattatatttacttcacgattcactcatcttttaaaatcttagaatatcatttaagaatggctaatc---tttcaccgttctttgtct |
23574375 |
T |
|
| Q |
155 |
tgagaatgacattgatttgtttcaaaattgagaatagtaaacggcttgagcatgaactactatatgtttagctgtagtagttcaagctgaagtcatttac |
254 |
Q |
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| T |
23574376 |
tgagaatgacattgatttgtttc-aaattgagagtaataaacggcttgagcgtgaactactacggctaaacatgcagtagttcatgctcaagtcatgtac |
23574474 |
T |
|
| Q |
255 |
tattcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaagatctcgctgtagtttcttgtgctgatgt |
350 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||| |||||| |
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| T |
23574475 |
tactcctaatttaagtttgagaggctatgaagtaattgataacatcaaagaagagctagaaaagaaatgtcccaatgtggtttcttgtgttgatgt |
23574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23574573 - 23574606
Alignment:
| Q |
1 |
tagccatggcttctaagataaaatattctttaaa |
34 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
23574573 |
tagccatgacttctaagataaaatattctttaaa |
23574606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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