View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_86 (Length: 362)
Name: NF8908_low_86
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 43112731 - 43112392
Alignment:
| Q |
20 |
actcttacacatgattatcaagatgtcgcatgtgtacgaaagtggatattaatgaaacatttttgaactttaagtcacgtcttaacatttgattcattca |
119 |
Q |
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| T |
43112731 |
actcttacacatgattatcaagatgtcgcatgtgtacgaaagtggatattaatgaaacatttttgaactttaagtcacgtcttaacatttgattcattca |
43112632 |
T |
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| Q |
120 |
tttatcaacttgtcaattccttcaatagagctttgcaatgcaaattattccaagttattcccttaggttgataaacaactacaatgactattagagctat |
219 |
Q |
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| T |
43112631 |
tttatcaacttgtcaattccttcaatagagctttgcaatgcaaattattccaagttattcccttaggttgataaacaactacaatgactattagagctat |
43112532 |
T |
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| Q |
220 |
cactttttcctttccccaaaacatcgttctcattttattcatcaaaacttgaacaaaaaacactttggtttgttgccatctcctcactaaaagccnnnnn |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43112531 |
cactttttcctttccccaaaacatcgttctcattttattcatcaaaacttgaacaaaaaacactttggtttgttgccatctcctcactaaaagccaaaaa |
43112432 |
T |
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| Q |
320 |
nntaaaagaagagaaaattgtaattaacaacaccaaactc |
359 |
Q |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
43112431 |
aataaaagaagagaaaattgtaattaacaacacaaaactc |
43112392 |
T |
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