View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_88 (Length: 358)
Name: NF8908_low_88
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 28783285 - 28782943
Alignment:
| Q |
1 |
accaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggca |
100 |
Q |
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| T |
28783285 |
accaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggca |
28783186 |
T |
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| Q |
101 |
cttccaccaccagtcccgatcaagaaaccatgtccaccaaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaa |
200 |
Q |
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| T |
28783185 |
cttccaccaccagtcccgatcaagaaaccatgtccaccaaagattgagcacccagttctaccacctgttccaatatataagcctccagtagtaattccaa |
28783086 |
T |
|
| Q |
201 |
agccacccgttgttccaatatacaaaccaccagttgttcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaa |
300 |
Q |
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| T |
28783085 |
agccacccgttgttccaatatacaaaccaccagttattcttcctccattcaagaaaccaccatgtccacctcttccaacgctccctccattgcctccaaa |
28782986 |
T |
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| Q |
301 |
gagctttttccatcaccccaagttcggaaaattgcctccaaag |
343 |
Q |
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| T |
28782985 |
gagctttttccatcaccccaagttcggaaaattgcctccaaag |
28782943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 28783383 - 28783201
Alignment:
| Q |
8 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
107 |
Q |
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| T |
28783383 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
28783284 |
T |
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| Q |
108 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
187 |
Q |
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| T |
28783283 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
28783201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 28782955 - 28782904
Alignment:
| Q |
289 |
attgcctccaaagagctttttccatcaccccaagttcggaaaattgcctcca |
340 |
Q |
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| T |
28782955 |
attgcctccaaagagctttttccatcaccctaagtatggaaaatggcctcca |
28782904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 28782909 - 28782870
Alignment:
| Q |
284 |
cctccattgcctccaaagagctttttccatcaccccaagt |
323 |
Q |
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| T |
28782909 |
cctccattgcctccaaagagcttcttccaccaccccaagt |
28782870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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