View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_90 (Length: 353)
Name: NF8908_low_90
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 5162625 - 5162959
Alignment:
| Q |
1 |
ctattgaagcatggactgaaggtacatacctttccctaaagtatccaattgaacctacaaaaatggtagcaatagagagacggtatgtgataaaaaccaa |
100 |
Q |
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| T |
5162625 |
ctattgaagcatggactgaaggtacatacctttccctaaagtatccaattgaacctacaaaaatggtagcaatagagagacggtatgtgataaaaaccaa |
5162724 |
T |
|
| Q |
101 |
atggttcattccttcatcaaggactttcttgagaagaatattcacaaccgcaaaagaaatatcaattgctatcattatcataaaaggtttccattcttca |
200 |
Q |
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| T |
5162725 |
atggttcattccttcatcaaggactttcttgagaagaatattcacaaccgcaaaagaaatatcaattgctatcattatcataaaaggtttccattcttca |
5162824 |
T |
|
| Q |
201 |
caactcttcatttcaccaatgcaattgtattcaacaacaatgcaaattcaattctacttgatatgttgtaatttagattagaccttactgttgatttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5162825 |
caactcttcatttcaccaatgcaattgtattcaacaacaatgcaaattcaattctacttgatatgttgtaatttagattagaccttactgttgatttata |
5162924 |
T |
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| Q |
301 |
taaaataatattccagaataagtggtaacaaagca |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5162925 |
taaaataatattccagaataagtggtaacaaagca |
5162959 |
T |
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