View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_94 (Length: 339)
Name: NF8908_low_94
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 1954796 - 1954502
Alignment:
| Q |
14 |
agttacatgtataccttgagagcatcacaaacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcac |
113 |
Q |
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| T |
1954796 |
agttacaagtataccttgagagcatcacaaaaagcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcac |
1954697 |
T |
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| Q |
114 |
ctgaaattgctgttccattttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttg |
213 |
Q |
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| T |
1954696 |
ctgaaattgctactccattttcattttgcttaagggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttg |
1954597 |
T |
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| Q |
214 |
attgcttccatatatcacacttccatccctattatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactata |
312 |
Q |
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| T |
1954596 |
attgcttccatatatcacacttccatccctattatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagactata |
1954502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 1940326 - 1940044
Alignment:
| Q |
23 |
tataccttgagagcatcacaaacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattg |
122 |
Q |
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| T |
1940326 |
tataccttaagagaatcacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattg |
1940227 |
T |
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| Q |
123 |
ctgttccattttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttcc |
222 |
Q |
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| T |
1940226 |
ctgttccatcttcattatgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttcc |
1940127 |
T |
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| Q |
223 |
atatatcacacttccatccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaatt |
303 |
Q |
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| T |
1940126 |
atatatcacacttccatccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaatt |
1940044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 1925998 - 1925776
Alignment:
| Q |
24 |
ataccttgagagcatcacaaacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgc |
123 |
Q |
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| T |
1925998 |
ataccttgagagcatcacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgc |
1925899 |
T |
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| Q |
124 |
tgttccattttcattatgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgctt |
220 |
Q |
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| T |
1925898 |
aactccatcttcgttttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgctt |
1925799 |
T |
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| Q |
221 |
ccatatatcacacttccatccct |
243 |
Q |
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| T |
1925798 |
ccatatatcacacttccatccct |
1925776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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