View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8908_low_96 (Length: 336)
Name: NF8908_low_96
Description: NF8908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8908_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 39170479 - 39170153
Alignment:
| Q |
1 |
ttaaataatggatcacaattaacatcaaggagacaaaaacccataatcatggtggtcgaagtgcctattatttctttccccaaacaaaatcactgctatt |
100 |
Q |
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| T |
39170479 |
ttaaataatggatcacaattaacatcaaggagacaaaaacccataatcatggtggtcgaagtgcctattatttctttccccaaaca------ctgccatt |
39170386 |
T |
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| Q |
101 |
tgatgaaaaacgaattgagtaatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtattgtattttctatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39170385 |
tgatgaaaaacgaattgagtaatagaaagtgggagagtaaaaaacttgatgactagtttaagatgtgattgtcttagctaagtatcgtattttctatttt |
39170286 |
T |
|
| Q |
201 |
ttaagatgagtcatataattttggaataaggaaatttaagtgagttggactctaaaaaggtcaccagaattatgaaaggtttggtaagcactacctatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39170285 |
ttaagatgagtcatataattttggaataaggaaatttaagtgagttgaactctaaaaaggtcaccaaaattatgaaaggtttggtaagcactacctatta |
39170186 |
T |
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| Q |
301 |
gaatgaacaatcacatatgcttgtctctgctcc |
333 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
39170185 |
gaatgaacaatcacatatgcttgtttctgctcc |
39170153 |
T |
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