View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8909_high_10 (Length: 317)
Name: NF8909_high_10
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 40660152 - 40660450
Alignment:
| Q |
1 |
ttttaaatcctgcagcagtgatgtacttggagtagggtccatataatcttatgattttagtatcctctatagaatcccatttattaaaccaaaaagtaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40660152 |
ttttaaatcctgcagcagtgatgtacttggagtagggtccatataatcttatgattttagtatcctccatagaatcccatttattaaaccaaaaagtaac |
40660251 |
T |
|
| Q |
101 |
caattagtatcaaacacaatttgattgatcattggcataagccaattgtcatgctccggagatcaaacaacacacaattgcaagcgtcaaagctagattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40660252 |
caattagtatcaaacacaatttgattgatcattggcataagccaattgtcatgctccggagatcaaacaacacacaattgcaagcgtcaaagctagatta |
40660351 |
T |
|
| Q |
201 |
gaaacttatcattatggagggtcgaagaagctggagaacaatgaaaccatagctccatccatgttagaactagttgcggtgcggtgcaccataaacctt |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
40660352 |
gaaacttatcataatggagggtcgaagaagctggagaacgatgaaaccatagctccatccatgttagaactagttgcagtgcggtacaccataaacctt |
40660450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University