View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_high_8 (Length: 352)
Name: NF8909_high_8
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 38005340 - 38005004
Alignment:
| Q |
1 |
ggatgaaaattaagcgaggaaacattatgaaaactatgcaaggaaacaataatccatgatctagtttcaggaagacaaataggtacccaaaagaagaagg |
100 |
Q |
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| T |
38005340 |
ggatgaaaattaagcgaggaaacattatgaaaactatgcaaggaaacaataatccctgatctagtttcaggaagacaaataggtacccaaaagaagaagg |
38005241 |
T |
|
| Q |
101 |
aaaaactaaatcacagcagtccaaaagtctgaccataaatgttctggtggagaatttgccaggcctttaacaacaattttgaatgtcaacaaatagtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005240 |
aaaaactaaatcacagcagtccaaaagtctgaccataaatgttctggtggagaaattgccaggcctttaacaacaattttgaatgtcaacaaatagtgga |
38005141 |
T |
|
| Q |
201 |
ggtgatagagtacataccttccgtttgataggtacagatggattcgcagttggcttaaaaaatgattccaatctggtatttccagaatnnnnnnnnngtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38005140 |
ggtgatagagtacataccttccgtttgataggtacagatggattcgcagttggcttaaaaaatgattccaatctggtatttccagaa---aaaaaaagtt |
38005044 |
T |
|
| Q |
301 |
agtgtgacaagacaatagaaaaggtctacactgatgtcca |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38005043 |
agtgtgacaagacaatagaaaaggtctacactgatgtcca |
38005004 |
T |
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