View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_1 (Length: 756)
Name: NF8909_low_1
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 11370708 - 11370307
Alignment:
| Q |
7 |
gagatggacatcatctatgatgtaattgatttcatttttgaagatagacatagattttaatcttatgtctttgctcatcaacacaattacggatgtaatc |
106 |
Q |
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| T |
11370708 |
gagatgaacttcatctatgatgtaattgatttcatttttgaagacagacatagattttaatcttatgtctttgctcatcaacacaattacagatgtaatc |
11370609 |
T |
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| Q |
107 |
acatttaccctagtcaaacaattcctcatctctttacggtcatcttcagataccaagtagaaacctatgcctgatgtcattgtcttcaatgcatcatagt |
206 |
Q |
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| T |
11370608 |
acatttgccctagtcaaacaattcctcatctctttacggtcatcttcagataccaagtagaaacctatgcctgatgtcattgtcttcaatgcatcatagg |
11370509 |
T |
|
| Q |
207 |
ttatagttgatgccattgctttcaaagcattacttagaagctcagggcattcactaaacaatgaaaagcaaggttccaaaaaataaaatccaggaaatat |
306 |
Q |
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| T |
11370508 |
ttatagttgatgccattgctttcaaagcattacttagaagctcagggcattgactaaacaatgaaaagcaaggttccaaaaaataaaatccaggaaatat |
11370409 |
T |
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| Q |
307 |
ttgatcatagtgaatgtacttctcatactcgtcttctcgaacgcgctgcgagacaattaaatttatgatcaataacggaacggctaaactcagatcatat |
406 |
Q |
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| T |
11370408 |
ttgatcatagtgaatgtacttctcatactcgtcttctcgaacgcgctgcgagacgattaaatttatgatcaataacggaacggctaaactcagatcatat |
11370309 |
T |
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| Q |
407 |
ca |
408 |
Q |
| |
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| T |
11370308 |
ca |
11370307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 469 - 739
Target Start/End: Complemental strand, 11370247 - 11369977
Alignment:
| Q |
469 |
gtaagatgtcatgtcaaccaataattttatatcttttcctacctcaaaacaaatgtctaaatgtaaacaagagtataagtatacaaagatataaagagct |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11370247 |
gtaagatgtcatgtcaaccaataattttatatcttttcctacctcaaaacaaatgtctaaatgtaaacaagagtataagtatacaaagatataaagagct |
11370148 |
T |
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| Q |
569 |
taaacatagaggacaaaaactccatgcccaactgacccgacagctacatataaaataaaacaacacctaatttgcaaaactcaagtgttactggtacacc |
668 |
Q |
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| T |
11370147 |
taaacatagaggacaaaaactccatgcccaacagacccgacggctacatataaaataaaacaacacctaatttgcaaaactcaagtggtactggtacacc |
11370048 |
T |
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| Q |
669 |
cgttttcgaaaacaacacatcaatccctgcacctaatgtgtcaaatttcgtcaaaaaatgcaacttcaact |
739 |
Q |
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| T |
11370047 |
cgttttcgaaaacaacacatcaatccctgcacctaatgtgtcaaatttcgtcaaaaaatgcaacttcaact |
11369977 |
T |
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