View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8909_low_11 (Length: 500)

Name: NF8909_low_11
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8909_low_11
NF8909_low_11
[»] chr1 (35 HSPs)
chr1 (226-479)||(10489683-10489939)
chr1 (9-141)||(10489965-10490098)
chr1 (315-354)||(47719124-47719163)
chr1 (315-353)||(24631845-24631883)
chr1 (315-348)||(9872122-9872155)
chr1 (315-359)||(31061920-31061964)
chr1 (319-359)||(31092661-31092701)
chr1 (315-358)||(10132461-10132504)
chr1 (315-358)||(10843338-10843381)
chr1 (321-360)||(13135778-13135817)
chr1 (315-354)||(28039877-28039916)
chr1 (320-359)||(29059427-29059466)
chr1 (315-354)||(29800538-29800577)
chr1 (317-356)||(41972749-41972788)
chr1 (315-358)||(45190286-45190329)
chr1 (315-354)||(45481498-45481537)
chr1 (315-354)||(49875616-49875655)
chr1 (316-354)||(1408440-1408478)
chr1 (316-354)||(18056734-18056772)
chr1 (315-353)||(19396208-19396246)
chr1 (315-353)||(40618916-40618954)
chr1 (315-365)||(43843885-43843935)
chr1 (315-345)||(45418080-45418110)
chr1 (314-348)||(51370584-51370618)
chr1 (315-348)||(13794525-13794558)
chr1 (315-348)||(17283962-17283995)
chr1 (315-348)||(34733411-34733444)
chr1 (315-344)||(35473967-35473996)
chr1 (315-348)||(38448883-38448916)
chr1 (315-348)||(42416814-42416847)
chr1 (314-347)||(46707884-46707917)
chr1 (315-348)||(50263391-50263424)
chr1 (315-348)||(50638933-50638966)
chr1 (315-359)||(30548108-30548152)
chr1 (315-359)||(47417783-47417827)
[»] chr8 (16 HSPs)
chr8 (315-354)||(8146136-8146175)
chr8 (315-353)||(7968957-7968995)
chr8 (315-348)||(23816801-23816834)
chr8 (315-356)||(37141360-37141401)
chr8 (315-354)||(8442504-8442543)
chr8 (315-354)||(10601768-10601807)
chr8 (315-354)||(37999437-37999476)
chr8 (315-348)||(9067093-9067126)
chr8 (315-348)||(17704024-17704057)
chr8 (315-348)||(19778076-19778109)
chr8 (315-348)||(30623304-30623337)
chr8 (315-348)||(33451366-33451399)
chr8 (315-348)||(42208486-42208519)
chr8 (315-359)||(8984511-8984555)
chr8 (316-348)||(34968566-34968598)
chr8 (316-348)||(37938506-37938538)
[»] chr5 (18 HSPs)
chr5 (315-358)||(11647198-11647241)
chr5 (316-354)||(31198714-31198752)
chr5 (315-358)||(11844455-11844498)
chr5 (315-354)||(16752519-16752558)
chr5 (315-354)||(22498947-22498986)
chr5 (315-354)||(31545876-31545915)
chr5 (315-358)||(38495143-38495186)
chr5 (315-358)||(41417764-41417807)
chr5 (315-354)||(43108574-43108613)
chr5 (315-349)||(16531292-16531326)
chr5 (315-353)||(20258551-20258589)
chr5 (316-354)||(40056608-40056646)
chr5 (315-348)||(11017187-11017220)
chr5 (315-348)||(16133082-16133115)
chr5 (315-348)||(19068456-19068489)
chr5 (315-348)||(27679509-27679542)
chr5 (315-348)||(36321511-36321544)
chr5 (316-348)||(5846040-5846072)
[»] chr2 (32 HSPs)
chr2 (315-358)||(22354960-22355003)
chr2 (315-357)||(22359007-22359049)
chr2 (315-354)||(4897548-4897587)
chr2 (315-354)||(4944942-4944981)
chr2 (315-354)||(7772477-7772516)
chr2 (315-354)||(18324911-18324950)
chr2 (315-354)||(26133537-26133576)
chr2 (315-354)||(27152358-27152397)
chr2 (315-345)||(12231891-12231921)
chr2 (316-354)||(36264497-36264535)
chr2 (316-358)||(39088817-39088859)
chr2 (315-348)||(6141231-6141264)
chr2 (315-348)||(12124556-12124589)
chr2 (315-348)||(12124695-12124728)
chr2 (315-348)||(15654886-15654919)
chr2 (315-348)||(18231490-18231523)
chr2 (315-348)||(19095130-19095163)
chr2 (315-348)||(19179067-19179100)
chr2 (315-348)||(20120738-20120771)
chr2 (315-348)||(21482536-21482569)
chr2 (315-348)||(24593387-24593420)
chr2 (315-348)||(26400762-26400795)
chr2 (315-348)||(28771593-28771626)
chr2 (315-348)||(35685078-35685111)
chr2 (315-348)||(40099400-40099433)
chr2 (314-359)||(40799610-40799655)
chr2 (315-348)||(43117207-43117240)
chr2 (315-359)||(5168596-5168640)
chr2 (314-346)||(10065486-10065518)
chr2 (316-348)||(31963084-31963116)
chr2 (315-359)||(34903517-34903561)
chr2 (316-348)||(36547253-36547285)
[»] chr3 (31 HSPs)
chr3 (316-358)||(34326001-34326043)
chr3 (315-348)||(48315041-48315074)
chr3 (319-359)||(5135081-5135121)
chr3 (315-359)||(21914088-21914132)
chr3 (316-356)||(38094635-38094675)
chr3 (315-359)||(54584033-54584077)
chr3 (315-358)||(1744007-1744050)
chr3 (317-360)||(7961751-7961794)
chr3 (315-350)||(10594686-10594721)
chr3 (315-354)||(17588367-17588406)
chr3 (315-358)||(25016353-25016396)
chr3 (319-354)||(53633638-53633673)
chr3 (314-348)||(7974528-7974562)
chr3 (316-354)||(19126554-19126592)
chr3 (315-353)||(28093360-28093398)
chr3 (315-349)||(28266726-28266760)
chr3 (315-353)||(35126286-35126324)
chr3 (315-348)||(1149086-1149119)
chr3 (315-348)||(8113579-8113612)
chr3 (315-348)||(10926480-10926513)
chr3 (315-348)||(14741805-14741838)
chr3 (315-348)||(16663253-16663286)
chr3 (315-348)||(16980371-16980404)
chr3 (315-348)||(35191834-35191867)
chr3 (315-356)||(49223043-49223084)
chr3 (315-348)||(52119387-52119420)
chr3 (315-348)||(54230116-54230149)
chr3 (314-358)||(22365973-22366017)
chr3 (315-359)||(25505718-25505762)
chr3 (315-359)||(45096026-45096070)
chr3 (316-348)||(52904161-52904193)
[»] chr4 (28 HSPs)
chr4 (315-348)||(8027414-8027447)
chr4 (315-348)||(38416068-38416101)
chr4 (315-367)||(19908684-19908736)
chr4 (316-360)||(44689491-44689535)
chr4 (315-366)||(1753369-1753420)
chr4 (315-358)||(5360297-5360340)
chr4 (315-358)||(21623436-21623479)
chr4 (315-354)||(29908061-29908100)
chr4 (315-354)||(44221452-44221491)
chr4 (315-353)||(20096287-20096325)
chr4 (316-358)||(46409499-46409541)
chr4 (316-354)||(54151643-54151681)
chr4 (315-353)||(56204953-56204991)
chr4 (317-358)||(5179907-5179948)
chr4 (315-348)||(7230291-7230324)
chr4 (315-348)||(12058330-12058363)
chr4 (315-348)||(22279537-22279570)
chr4 (315-348)||(33900741-33900774)
chr4 (315-348)||(34247451-34247484)
chr4 (315-348)||(46676515-46676548)
chr4 (315-348)||(49949345-49949378)
chr4 (315-348)||(50442764-50442797)
chr4 (315-348)||(53190306-53190339)
chr4 (315-348)||(56551609-56551642)
chr4 (319-359)||(8415516-8415556)
chr4 (315-359)||(12439664-12439708)
chr4 (316-348)||(14577525-14577557)
chr4 (315-347)||(49473657-49473689)
[»] scaffold0238 (1 HSPs)
scaffold0238 (315-354)||(25394-25433)
[»] scaffold0126 (1 HSPs)
scaffold0126 (315-354)||(34905-34944)
[»] chr7 (25 HSPs)
chr7 (315-358)||(2962743-2962786)
chr7 (315-358)||(7872765-7872808)
chr7 (315-358)||(10362321-10362364)
chr7 (315-354)||(21322180-21322219)
chr7 (315-358)||(27263342-27263385)
chr7 (315-358)||(27270236-27270279)
chr7 (317-352)||(28735251-28735286)
chr7 (315-354)||(37230045-37230084)
chr7 (315-354)||(44941430-44941469)
chr7 (315-353)||(39458561-39458599)
chr7 (315-348)||(2618690-2618723)
chr7 (315-348)||(4340138-4340171)
chr7 (315-348)||(8615034-8615067)
chr7 (315-348)||(18714459-18714492)
chr7 (315-348)||(21050239-21050272)
chr7 (315-352)||(22929512-22929549)
chr7 (315-359)||(23800091-23800136)
chr7 (315-348)||(24991792-24991825)
chr7 (317-354)||(31191625-31191662)
chr7 (315-348)||(34568350-34568383)
chr7 (303-344)||(35431063-35431104)
chr7 (315-348)||(46987097-46987130)
chr7 (316-348)||(5833053-5833085)
chr7 (316-348)||(26816682-26816714)
chr7 (316-356)||(48837870-48837910)
[»] chr6 (8 HSPs)
chr6 (315-358)||(3487932-3487975)
chr6 (315-358)||(3808135-3808178)
chr6 (315-358)||(14679126-14679169)
chr6 (319-358)||(24438303-24438342)
chr6 (315-354)||(31971534-31971573)
chr6 (315-348)||(788877-788910)
chr6 (315-356)||(2726434-2726475)
chr6 (314-354)||(13654229-13654269)
[»] scaffold0026 (1 HSPs)
scaffold0026 (315-348)||(75336-75369)
[»] scaffold0004 (1 HSPs)
scaffold0004 (315-348)||(91579-91612)
[»] scaffold0005 (1 HSPs)
scaffold0005 (316-348)||(239818-239850)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 226 - 479
Target Start/End: Complemental strand, 10489939 - 10489683
Alignment:
Q  226 aattagaaaagcacaccaaaaagcaataaatacatcgagggtgataaaagatacaaacaatttgaaattttgtgatacaaacaccattacttgcatata- 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  10489939 aattagaaaagcacaccaaaaagcaataaatacatcgagggtgataaaagatacaaacaatttgaaattttgcgatacaaacaccactacttgcatataa 10489840  T
Q  325 --ttatgcattatccttaccaactgaattaagttcatatgaacacacgccaccgagctacatgaacacaatacgaatccaattttcatcactccttataa 422  Q
      ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10489839 tattatgcattatccttaccaactgaattaagttcacgtgaacacacgccaccgagctacatgaacacaatacgaatccaattttcaccactccttataa 10489740  T
Q  423 tggctcaaatgaggccattataaggaacatatattgaatccgacaactttatcttac 479  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10489739 tggctcaaatgaggccattataaggagcatatattgaatccgacaactttatcttac 10489683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 10490098 - 10489965
Alignment:
Q  9 agaagcagagagggatatattaaaatgattaggtatca-gactacctataaaagatgttacaccaatgaaaaagtttaagaggcaaagccactataactc 107  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10490098 agaagcagaaaggaatatattaaaatgattaggtatcaagactacctataaaagatgttacaccaatgaaaaagtttaagaggcaaagccactataactc 10489999  T
Q  108 ctaaataacaaatacacctactaagataatgcaa 141  Q
    |||||||||||| |||||||||||||||||||||    
T  10489998 ctaaataacaaacacacctactaagataatgcaa 10489965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 47719124 - 47719163
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  47719124 cttgcatatattatgcattatccttaccaactgagttaag 47719163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 24631883 - 24631845
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24631883 cttgcatatattatgcattatccttaccaactgagttaa 24631845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 9872122 - 9872155
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||||||||||||||    
T  9872122 cttgcatatattatgcattatccttaccaactga 9872155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 31061920 - 31061964
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||    
T  31061920 cttgcatataatatgcattgtccttaccaactgagttaagttcat 31061964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 31092701 - 31092661
Alignment:
Q  319 catatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  31092701 catatattatgcattatccttaccaaatgagttaagttcat 31092661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 10132461 - 10132504
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||    
T  10132461 cttgcatatattatgcattgtccttaccaactgatctaagttca 10132504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 10843338 - 10843381
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  10843338 cttgcatatattatgcattatccttatcaactgagctaagttca 10843381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 13135778 - 13135817
Alignment:
Q  321 tatattatgcattatccttaccaactgaattaagttcata 360  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  13135778 tatattatggattatccttaccaactgagttaagttcata 13135817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 28039877 - 28039916
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  28039877 cttgcatatattatgcattgtccttaccaactgagttaag 28039916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 29059427 - 29059466
Alignment:
Q  320 atatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  29059427 atatattatgcattattcttaccaactgaattaagctcat 29059466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 29800577 - 29800538
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  29800577 cttgcatattttatgcattatccttaccaactgagttaag 29800538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 41972749 - 41972788
Alignment:
Q  317 tgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  41972749 tgcatatattatgcattatccctaccaactgagttaagtt 41972788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 45190286 - 45190329
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  45190286 cttgcatatattatgcattgtccataccaactgaactaagttca 45190329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 45481537 - 45481498
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  45481537 cttgcatatattatgcattgtccttaccaaatgaattaag 45481498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 49875616 - 49875655
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  49875616 cttgcatatattatgcattgtccttaccaactgagttaag 49875655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 1408478 - 1408440
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  1408478 ttgcatatattatgcattgtccttaccaactgagttaag 1408440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 18056734 - 18056772
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  18056734 ttgcatatattatgcattgtccttaccaactgagttaag 18056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 19396208 - 19396246
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  19396208 cttgcatatattatgcattatccctaccaactgagttaa 19396246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 40618954 - 40618916
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  40618954 cttgcatatattatgcattatctttaccaactgagttaa 40618916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 43843935 - 43843885
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcatatgaac 365  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||    
T  43843935 cttgcatatattatgcattgtccttaccaactaagttaagctcacatgaac 43843885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 45418080 - 45418110
Alignment:
Q  315 cttgcatatattatgcattatccttaccaac 345  Q
    |||||||||||||||||||||||||||||||    
T  45418080 cttgcatatattatgcattatccttaccaac 45418110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 51370618 - 51370584
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| |||||||||||||||    
T  51370618 acttgcatatattatgcatcatccttaccaactga 51370584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 13794525 - 13794558
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||||| |||||||    
T  13794525 cttgcatatattatgcattatccttatcaactga 13794558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 17283995 - 17283962
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  17283995 cttgcatatattatgcattgtccttaccaactga 17283962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 34733444 - 34733411
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  34733444 cttgcatatattatgcattgtccttaccaactga 34733411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 344
Target Start/End: Complemental strand, 35473996 - 35473967
Alignment:
Q  315 cttgcatatattatgcattatccttaccaa 344  Q
    ||||||||||||||||||||||||||||||    
T  35473996 cttgcatatattatgcattatccttaccaa 35473967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 38448883 - 38448916
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  38448883 cttgcatatattatgcattgtccttaccaactga 38448916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 42416847 - 42416814
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||||| |||||||    
T  42416847 cttgcatatattatgcattatccttatcaactga 42416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 46707917 - 46707884
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactg 347  Q
    |||||||||||||||||||| |||||||||||||    
T  46707917 acttgcatatattatgcattgtccttaccaactg 46707884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 50263424 - 50263391
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| |||||||||||    
T  50263424 cttgcatatattatgcattatcgttaccaactga 50263391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 50638933 - 50638966
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  50638933 cttgcatatattatgcattgtccttaccaactga 50638966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 30548108 - 30548152
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||||    
T  30548108 cttgcatatattatgcattgtccttaccaactaagttaagctcat 30548152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 47417827 - 47417783
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| |||| ||||| ||| ||||||||||    
T  47417827 cttgcatatattatgcattgtcctaaccaattgagttaagttcat 47417783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 8146175 - 8146136
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8146175 cttgcatatattatgcattatccttatcaactgaattaag 8146136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 7968957 - 7968995
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  7968957 cttgcatatattatgcattgtccttaccaactgaattaa 7968995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 23816834 - 23816801
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||||||||||||||    
T  23816834 cttgcatatattatgcattatccttaccaactga 23816801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 37141401 - 37141360
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  37141401 cttgcatatattatgcattgtccataccaactgaattaagtt 37141360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 8442504 - 8442543
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  8442504 cttgcatatattatgcattgtccttaccaactgagttaag 8442543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 10601807 - 10601768
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  10601807 cttgcatatattatgcattgtccataccaactgaattaag 10601768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 37999437 - 37999476
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  37999437 cttgcatatattatgcattatccataccaactgagttaag 37999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 9067126 - 9067093
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||| |||||||||||||||||||||||||    
T  9067126 cttgcataaattatgcattatccttaccaactga 9067093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 17704057 - 17704024
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  17704057 cttgcatatattatgcattgtccttaccaactga 17704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 19778109 - 19778076
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  19778109 cttgcatatattatgcattgtccttaccaactga 19778076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 30623337 - 30623304
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  30623337 cttgcatatattatgcattgtccttaccaactga 30623304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 33451366 - 33451399
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  33451366 cttgcatatattatgcattatccataccaactga 33451399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 42208486 - 42208519
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  42208486 cttgcatatattatgcattgtccttaccaactga 42208519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 8984511 - 8984555
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||||||| |||||||| |||||||||| ||||| ||||    
T  8984511 cttgcatatattatacattatccataccaactgagttaagctcat 8984555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 34968598 - 34968566
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| ||||||||||    
T  34968598 ttgcatatattatgcattatccataccaactga 34968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 37938538 - 37938506
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| ||||||||||    
T  37938538 ttgcatatattatgcattatccataccaactga 37938506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 11647241 - 11647198
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  11647241 cttgcatatattatgcattgtccttaccaactgagttaagttca 11647198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 31198752 - 31198714
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  31198752 ttgcatatattatgcattatccttaccaactgagttaag 31198714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 11844455 - 11844498
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||    
T  11844455 cttgcatatattatgcattgtccttaccaactgagctaagttca 11844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 16752519 - 16752558
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  16752519 cttgcatatattatgcattgtccttaccaactgaactaag 16752558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 22498986 - 22498947
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  22498986 cttgcatatattatgcattgtccttaccaactgagttaag 22498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 31545915 - 31545876
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  31545915 cttgcatatattatgcattatcctaaccaactgagttaag 31545876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 38495186 - 38495143
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||    
T  38495186 cttgcatattttatgcattatccataccaactgagttaagttca 38495143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 41417807 - 41417764
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||    
T  41417807 cttgcatatattatacattatccctaccaactgaactaagttca 41417764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 43108613 - 43108574
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  43108613 cttgcatatattatgcattgtccttaccaactgagttaag 43108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 349
Target Start/End: Original strand, 16531292 - 16531326
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaa 349  Q
    ||||||||||||||||||| |||||||||||||||    
T  16531292 cttgcatatattatgcattgtccttaccaactgaa 16531326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 20258589 - 20258551
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  20258589 cttgcatatattatgcattatccataccaactgagttaa 20258551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 40056608 - 40056646
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  40056608 ttgcatatattatgcattgtccttaccaactgagttaag 40056646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 11017220 - 11017187
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  11017220 cttgcatatattatgcattatccctaccaactga 11017187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 16133082 - 16133115
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  16133082 cttgcatatattatgcattgtccttaccaactga 16133115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 19068456 - 19068489
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  19068456 cttgcatatattatgcattatccataccaactga 19068489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 27679542 - 27679509
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| |||||||||||    
T  27679542 cttgcatatattatgcattatctttaccaactga 27679509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 36321511 - 36321544
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  36321511 cttgcatatattatgcattgtccttaccaactga 36321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 5846072 - 5846040
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||| ||||||||||||||    
T  5846072 ttgcatatattatgcattgtccttaccaactga 5846040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 22354960 - 22355003
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  22354960 cttgcatatattatgcattgtccttaccgactgaattaagttca 22355003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 22359049 - 22359007
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttc 357  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  22359049 cttgcatatattatgcattgtccttaccaactgagttaagttc 22359007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 4897587 - 4897548
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  4897587 cttgcatatattatgcattgtccttaccaactgagttaag 4897548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 4944981 - 4944942
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  4944981 cttgcatatattatgcattgtccttaccaactgagttaag 4944942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 7772477 - 7772516
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  7772477 cttgcatatattatgcattatccttaccaattgagttaag 7772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 18324911 - 18324950
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  18324911 cttgcatatattatgcattgtccttaccaactgagttaag 18324950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 26133537 - 26133576
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  26133537 cttgcatatattatgcattgtccttaccaactgagttaag 26133576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 27152397 - 27152358
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  27152397 cttgcatatattatgcattatccctaccaactgagttaag 27152358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 12231921 - 12231891
Alignment:
Q  315 cttgcatatattatgcattatccttaccaac 345  Q
    |||||||||||||||||||||||||||||||    
T  12231921 cttgcatatattatgcattatccttaccaac 12231891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 36264497 - 36264535
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  36264497 ttgcatatattatgcattatccataccaattgaattaag 36264535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 39088817 - 39088859
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||||||| || ||||||||||| |||||||||    
T  39088817 ttgcatatattatgcattgtctttaccaactgagttaagttca 39088859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 6141264 - 6141231
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  6141264 cttgcatatattatgcattgtccttaccaactga 6141231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 12124589 - 12124556
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  12124589 cttgcatatattatgcattgtccttaccaactga 12124556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 12124728 - 12124695
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  12124728 cttgcatatattatgcattgtccttaccaactga 12124695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 15654886 - 15654919
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||| ||||||||||||||||||||||||    
T  15654886 cttgcatattttatgcattatccttaccaactga 15654919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 18231490 - 18231523
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  18231490 cttgcatatattatgcattgtccttaccaactga 18231523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 19095163 - 19095130
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||| |||||||||||||||||||||    
T  19095163 cttgcatatattctgcattatccttaccaactga 19095130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 19179067 - 19179100
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  19179067 cttgcatatattatgcattgtccttaccaactga 19179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 20120738 - 20120771
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  20120738 cttgcatatattatgcattgtccttaccaactga 20120771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 21482536 - 21482569
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||| |||||||||||||||||||    
T  21482536 cttgcatatattatacattatccttaccaactga 21482569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 24593420 - 24593387
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  24593420 cttgcatatattatgcattgtccttaccaactga 24593387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 26400795 - 26400762
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  26400795 cttgcatatattatgcattgtccttaccaactga 26400762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 28771626 - 28771593
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  28771626 cttgcatatattatgcattgtccttaccaactga 28771593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 35685078 - 35685111
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  35685078 cttgcatatattatgcattgtccttaccaactga 35685111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 40099400 - 40099433
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  40099400 cttgcatatattatgcattgtccttaccaactga 40099433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Original strand, 40799610 - 40799655
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||||||||||||| |||||| |||| ||| |||||||||    
T  40799610 acttgcatatattatgcattgtccttatcaaccgaactaagttcat 40799655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 43117207 - 43117240
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  43117207 cttgcatatattatgcattgtccttaccaactga 43117240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 5168596 - 5168640
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||||||| || ||||||| ||||| ||||    
T  5168596 cttgcatatattatgcattatccctatcaactgagttaagctcat 5168640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 10065518 - 10065486
Alignment:
Q  314 acttgcatatattatgcattatccttaccaact 346  Q
    |||||||||||||||||||| ||||||||||||    
T  10065518 acttgcatatattatgcattgtccttaccaact 10065486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 31963084 - 31963116
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||| ||||||||||||||    
T  31963084 ttgcatatattatgcattgtccttaccaactga 31963116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 34903561 - 34903517
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||| | ||||||||||||||| |||| ||||    
T  34903561 cttgcatatattatgcactgtccttaccaactgaactaagctcat 34903517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 36547253 - 36547285
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||| |||||||||||||||||||    
T  36547253 ttgcatatattatacattatccttaccaactga 36547285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 34326001 - 34326043
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  34326001 ttgcatatattatgcattgtccataccaactgaattaagttca 34326043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 48315041 - 48315074
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||||||||||||||    
T  48315041 cttgcatatattatgcattatccttaccaactga 48315074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 5135121 - 5135081
Alignment:
Q  319 catatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  5135121 catatattatgcattgtccttaccaactgaattaagctcat 5135081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 21914088 - 21914132
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  21914088 cttgcatatattatgcattgtccttaccaactgagttaagctcat 21914132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 38094635 - 38094675
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  38094635 ttgcatatattttgcattatccttaccaactgagttaagtt 38094675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 54584077 - 54584033
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    |||||||||||||||||||||| ||||||||| ||||||| ||||    
T  54584077 cttgcatatattatgcattatctttaccaactaaattaagctcat 54584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 1744007 - 1744050
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  1744007 cttgcatatattatgtattgtccataccaactgaattaagttca 1744050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 7961751 - 7961794
Alignment:
Q  317 tgcatatattatgcattatccttaccaactgaattaagttcata 360  Q
    |||||||||||| |||| |||||||||||||||||||| |||||    
T  7961751 tgcatatattatacattgtccttaccaactgaattaagctcata 7961794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 10594721 - 10594686
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaat 350  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10594721 cttgcatatattatgcattgtccttaccaactgaat 10594686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 17588406 - 17588367
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  17588406 cttgcatatattatgcattgtccttaccaactgagttaag 17588367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 25016396 - 25016353
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||||||| || |||||||| ||||||||    
T  25016396 cttgcatatattatgcattatccctatcaactgaagtaagttca 25016353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 53633638 - 53633673
Alignment:
Q  319 catatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||||||||| |||||    
T  53633638 catatattatgcattatccttaccaactgagttaag 53633673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 7974528 - 7974562
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||| ||||||||||    
T  7974528 acttgcatatattatgcattatccataccaactga 7974562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 19126592 - 19126554
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  19126592 ttgcatatattatgcattatccttactaactgagttaag 19126554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 28093398 - 28093360
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaa 28093360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 28266760 - 28266726
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaa 349  Q
    ||||||||||||||||||| |||||||||||||||    
T  28266760 cttgcatatattatgcattgtccttaccaactgaa 28266726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 35126286 - 35126324
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  35126286 cttgcatatattatgcattatccctaccaactgagttaa 35126324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 1149086 - 1149119
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  1149086 cttgcatatattatgcattgtccttaccaactga 1149119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 8113579 - 8113612
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  8113579 cttgcatatattatgcattgtccttaccaactga 8113612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 10926513 - 10926480
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  10926513 cttgcatatattatgcattgtccttaccaactga 10926480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 14741838 - 14741805
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  14741838 cttgcatatattatgcattgtccttaccaactga 14741805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 16663253 - 16663286
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  16663253 cttgcatatattatgcattatccataccaactga 16663286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 16980371 - 16980404
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  16980371 cttgcatatattatgcattgtccttaccaactga 16980404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 35191834 - 35191867
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  35191834 cttgcatatattatgcattgtccttaccaactga 35191867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 49223043 - 49223084
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  49223043 cttgcatatattatgcattatttttatcaactgaattaagtt 49223084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 52119420 - 52119387
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  52119420 cttgcatatattatgcattgtccttaccaactga 52119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 54230116 - 54230149
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  54230116 cttgcatatattatgcattgtccttaccaactga 54230149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 22366017 - 22365973
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  22366017 acttgcatatattatacattatctttatcaactgaactaagttca 22365973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 25505718 - 25505762
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| ||||||| |||||| ||||| ||||    
T  25505718 cttgcatatattatgcattgtccttacaaactgagttaagctcat 25505762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 45096070 - 45096026
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| |||||| |||||||  |||||||||    
T  45096070 cttgcatatattatgcattgtccttatcaactgagctaagttcat 45096026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 52904161 - 52904193
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||| ||||||||||||||    
T  52904161 ttgcatatattatgcattgtccttaccaactga 52904193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 8027414 - 8027447
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||||||||||||||    
T  8027414 cttgcatatattatgcattatccttaccaactga 8027447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 38416101 - 38416068
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||||||||||||||    
T  38416101 cttgcatatattatgcattatccttaccaactga 38416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 19908736 - 19908684
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcatatgaacac 367  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||| | ||||||    
T  19908736 cttgcatatattatgcattgtccttaccaactgagttaagctcacaggaacac 19908684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 44689535 - 44689491
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagttcata 360  Q
    |||||||||||||||||| | |||||||||||| |||||||||||    
T  44689535 ttgcatatattatgcattgttcttaccaactgagttaagttcata 44689491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 1753369 - 1753420
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcatatgaaca 366  Q
    ||||||||| ||||||||| ||||||||||||||| |||| ||||| |||||    
T  1753369 cttgcatatgttatgcattgtccttaccaactgaagtaagctcataagaaca 1753420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 5360297 - 5360340
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||    
T  5360297 cttgcatacattatgcatgatccttaccaactgagttaagttca 5360340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 21623436 - 21623479
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21623436 cttgcatatattatgcattgtccctaccaactgaactaagttca 21623479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 29908100 - 29908061
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  29908100 cttgcatatattatgcattgtccttaccaactgagttaag 29908061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 44221491 - 44221452
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  44221491 cttgcatatattatgcattgtccataccaactgaattaag 44221452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 20096287 - 20096325
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  20096287 cttgcatatattatgcattatccctaccaactgagttaa 20096325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 46409499 - 46409541
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||||||| || ||||||||||| |||||||||    
T  46409499 ttgcatatattatgcattgtctttaccaactgagttaagttca 46409541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 54151643 - 54151681
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  54151643 ttgcatatattatacattatccttaccaactgagttaag 54151681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 56204991 - 56204953
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  56204991 cttgcatatattatgcattgtccttaccaactgagttaa 56204953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 5179907 - 5179948
Alignment:
Q  317 tgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||| |||||| |||||||||||||||| |||||||||    
T  5179907 tgcatataatatgcaatatccttaccaactgagttaagttca 5179948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 7230324 - 7230291
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  7230324 cttgcatatattatgcattgtccttaccaactga 7230291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 12058363 - 12058330
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||||||| |||||    
T  12058363 cttgcatatattatgcattatccttaccgactga 12058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 22279537 - 22279570
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  22279537 cttgcatatattatgcattgtccttaccaactga 22279570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 33900741 - 33900774
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  33900741 cttgcatatattatgcattgtccttaccaactga 33900774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 34247484 - 34247451
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  34247484 cttgcatatattatgcattgtccttaccaactga 34247451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 46676515 - 46676548
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  46676515 cttgcatatattatgcattgtccttaccaactga 46676548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 49949378 - 49949345
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  49949378 cttgcatatattatgcattgtccttaccaactga 49949345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 50442764 - 50442797
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  50442764 cttgcatatattatgcattatccctaccaactga 50442797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 53190339 - 53190306
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||||||| ||||||||||    
T  53190339 cttgcatatattatgcattatccataccaactga 53190306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 56551609 - 56551642
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  56551609 cttgcatatattatgcattgtccttaccaactga 56551642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 8415516 - 8415556
Alignment:
Q  319 catatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||| ||| |||||||||||||||| ||||    
T  8415516 catatattatgcattgtccataccaactgaattaagctcat 8415556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 12439708 - 12439664
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttcat 359  Q
    ||||||||||||||||||| |||||| |||||||  |||||||||    
T  12439708 cttgcatatattatgcattgtccttatcaactgagctaagttcat 12439664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 14577525 - 14577557
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||| ||||||||||||||    
T  14577525 ttgcatatattatgcattgtccttaccaactga 14577557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 49473689 - 49473657
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactg 347  Q
    ||||||||||||||||||| |||||||||||||    
T  49473689 cttgcatatattatgcattgtccttaccaactg 49473657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 25433 - 25394
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  25433 cttgcatatattatgcattgtccttaccaactgagttaag 25394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 34905 - 34944
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  34905 cttgcatatattatgcattgtccttaccaactgagttaag 34944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 2962743 - 2962786
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||    
T  2962743 cttgcatatattatgcattatctttaccaattgaactaagttca 2962786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 7872765 - 7872808
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||    
T  7872765 cttgcatatattatgcattgtccttaccaactgagctaagttca 7872808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 10362321 - 10362364
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||    
T  10362321 cttgcatatattatgcattctccttatcaactgagttaagttca 10362364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 21322219 - 21322180
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  21322219 cttgcatacattatgcattatccttaccaactgagttaag 21322180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 27263385 - 27263342
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||    
T  27263385 cttgcatatattatgcattgtccataccaactgagttaagttca 27263342  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 27270279 - 27270236
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||    
T  27270279 cttgcatatattatgcattgtccataccaactgagttaagttca 27270236  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 352
Target Start/End: Original strand, 28735251 - 28735286
Alignment:
Q  317 tgcatatattatgcattatccttaccaactgaatta 352  Q
    ||||||||||||||||| ||||||||||||||||||    
T  28735251 tgcatatattatgcattgtccttaccaactgaatta 28735286  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 37230045 - 37230084
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  37230045 cttgcatatattatgcattttccttaccaactgagttaag 37230084  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 44941430 - 44941469
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  44941430 cttgcatatattatgcattatccctaccaactgagttaag 44941469  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 39458561 - 39458599
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaa 353  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  39458561 cttgcatatattatgcattatccctaccaactgagttaa 39458599  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 2618723 - 2618690
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  2618723 cttgcatatattatgcattgtccttaccaactga 2618690  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 4340171 - 4340138
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  4340171 cttgcatatattatgcattgtccttaccaactga 4340138  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 8615067 - 8615034
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  8615067 cttgcatatattatgcattgtccttaccaactga 8615034  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 18714492 - 18714459
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  18714492 cttgcatatattatgcattgtccttaccaactga 18714459  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 21050239 - 21050272
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  21050239 cttgcatatattatgcattgtccttaccaactga 21050272  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 22929512 - 22929549
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaatta 352  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  22929512 cttgcatattttatgcattatccataccaactgaatta 22929549  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 23800091 - 23800136
Alignment:
Q  315 cttgcatatattatgcattatc-cttaccaactgaattaagttcat 359  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||||    
T  23800091 cttgcatatattatgtattatctcttaccaaatgaattaagttcat 23800136  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 24991825 - 24991792
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  24991825 cttgcatatattatgcattgtccttaccaactga 24991792  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 31191625 - 31191662
Alignment:
Q  317 tgcatatattatgcattatccttaccaactgaattaag 354  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  31191625 tgcatataatatgcaatatccttaccaactgaattaag 31191662  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 34568350 - 34568383
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||||| |||||||    
T  34568350 cttgcatatattatgcattatccttatcaactga 34568383  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 344
Target Start/End: Complemental strand, 35431104 - 35431063
Alignment:
Q  303 caaacaccattacttgcatatattatgcattatccttaccaa 344  Q
    ||||| |||| |||||||||||||||||||| ||||||||||    
T  35431104 caaactccataacttgcatatattatgcattgtccttaccaa 35431063  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 46987130 - 46987097
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  46987130 cttgcatatattatgcattgtccttaccaactga 46987097  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 5833085 - 5833053
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| ||||||||||    
T  5833085 ttgcatatattatgcattatccctaccaactga 5833053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 26816682 - 26816714
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||| ||||||||||    
T  26816682 ttgcatatattatgcattatccctaccaactga 26816714  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 48837910 - 48837870
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    |||||||||||||||||||||| |||||| ||| |||||||    
T  48837910 ttgcatatattatgcattatccataccaattgagttaagtt 48837870  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 3487975 - 3487932
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  3487975 cttgcatatattatgcattattcttatcaactgaactaagttca 3487932  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Original strand, 3808135 - 3808178
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||    
T  3808135 cttgcatatattatgcattgtccttactaactgagttaagttca 3808178  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 14679169 - 14679126
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||||| ||||||||||| || |||||||||    
T  14679169 cttgcatatattatgcattgtccttaccaaccgagttaagttca 14679126  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 24438303 - 24438342
Alignment:
Q  319 catatattatgcattatccttaccaactgaattaagttca 358  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  24438303 catatattatgcattattcttaccaactgagttaagttca 24438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 31971573 - 31971534
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  31971573 cttgcatatattatgcattgtccttaccaactgagttaag 31971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 788910 - 788877
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  788910 cttgcatatattatgcattgtccttaccaactga 788877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 2726434 - 2726475
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactgaattaagtt 356  Q
    ||||||||||||||||||| ||| |||||||||| |||||||    
T  2726434 cttgcatatattatgcattgtccataccaactgagttaagtt 2726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 13654269 - 13654229
Alignment:
Q  314 acttgcatatattatgcattatccttaccaactgaattaag 354  Q
    ||||||||||||||||| || |||||||||||||| |||||    
T  13654269 acttgcatatattatgcgttgtccttaccaactgagttaag 13654229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 75369 - 75336
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    ||||||||||||||||||| ||||||||||||||    
T  75369 cttgcatatattatgcattgtccttaccaactga 75336  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 91579 - 91612
Alignment:
Q  315 cttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||||||||||| |||||||    
T  91579 cttgcatatattatgcattatccttaacaactga 91612  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 239850 - 239818
Alignment:
Q  316 ttgcatatattatgcattatccttaccaactga 348  Q
    |||||||||||||||||| ||||||||||||||    
T  239850 ttgcatatattatgcattgtccttaccaactga 239818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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