View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_12 (Length: 470)
Name: NF8909_low_12
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 33123143 - 33123599
Alignment:
| Q |
1 |
gtgaccagaggaagtactcatattttagtgaacatagtaataaagtagaacgagtcgacggttgacatgcttaagacttgctaattattagtaatttaaa |
100 |
Q |
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| T |
33123143 |
gtgaccagaggaagtactcatattttagtgaacatagtaataaagtagaacgagtcgacggttgacatgcttaagacttgctaattattagtaatttaaa |
33123242 |
T |
|
| Q |
101 |
ccagtttttaccttaggtaatataattttcactgcccagtgctatgtaacacaaatcgtgcgaatttgtgtagattgtgataagtatcaaaataattgga |
200 |
Q |
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| T |
33123243 |
ccaatttttaccttaggtaatataattttcactgcccagtgctatgtaacacaaatcgtgcgaatttgtgtagattgtgataagtatcaaaataattgga |
33123342 |
T |
|
| Q |
201 |
gaatcctctcttcatggtttagctattagaactagactaagtatatgtttgcactagtggtaggaatggaag-nnnnnnnnncgtgtgtttgaggtgaag |
299 |
Q |
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| T |
33123343 |
gaatcctctcttcatggtttagctattagaactagactaagtatatgtttgtactggtggtaggaatggaagaaaaaaaaaacgtgtgtttgaggtgaag |
33123442 |
T |
|
| Q |
300 |
ctggaaattttagtttcataaagtcatggtaaaattgggatgtaaacgtgagaaaagttggttcaacatcaaacgaaacactctgattgagactcaagca |
399 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
33123443 |
ctagaaattttagcttcataaagtcatggtaaaattgggataaaaacgtgagaaaagttggttcaacatcaaactaaacactgtgattgagactcaagca |
33123542 |
T |
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| Q |
400 |
ttccatgtactttatacttttagtgagtacaataacaaacactagggtttggtctgt |
456 |
Q |
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| T |
33123543 |
ttccatgtaccctatacttgcagtgagtacaataacaaagactagagtttagtctgt |
33123599 |
T |
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