View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8909_low_16 (Length: 411)
Name: NF8909_low_16
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 25216269 - 25216625
Alignment:
| Q |
1 |
ggcacaaaagaaattctcttnnnnnnntcactgattttattttatcnnnnnnnntaattgcttttaagacattttattattctaccttctaatattgaac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25216269 |
ggcacaaaagaaattctcttaaaaaaatcactgattttatattatcaaaaagtataatcgcttttaagacattttattattctaccttctaatattgaac |
25216368 |
T |
|
| Q |
101 |
atccaaaaacatagatcttttaagtggccactttaaaatgggttcacttttaattattggacctaaccccattaaagagtgtgagtgataagaactcggt |
200 |
Q |
| |
|
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || |
|
|
| T |
25216369 |
atctaaaaacataaat--tttaagtggccactttaaaatgggttcacttttaattattggacctaaccccattagagagtg--agtgataagaacttggc |
25216464 |
T |
|
| Q |
201 |
ggcatagaacaatatgataatgtgtggaagagaatgggcaataatatcattttcctttttgcaagtagacattgaaattgaacccttcgaattattcg-c |
299 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||| | |
|
|
| T |
25216465 |
tggatagaacaatatgataatgtgtggaagagaatgggcaataatatcattttcc----------------ttgagattgaatccttcagattattcgac |
25216548 |
T |
|
| Q |
300 |
ccttaggttgaataccgagttttcaaaaaataatatatcattctccttttatcttttttctttatactagtaatgat |
376 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25216549 |
ttttaggttgaataccgaattttcgaaaaataatatagcattctccttttatcttttatctttatactagtaatgat |
25216625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 25216661 - 25216696
Alignment:
| Q |
376 |
tagagagtttgataagttgatttttcttaattttat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25216661 |
tagagagtttgataagttgatttttcttaattttat |
25216696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 25228594 - 25228634
Alignment:
| Q |
219 |
aatgtgtggaagagaatgggcaataatatcattttcctttt |
259 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
25228594 |
aatgtgtggaagagaatggacaatactatcattctcctttt |
25228634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University