View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_17 (Length: 408)
Name: NF8909_low_17
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 30916757 - 30917131
Alignment:
| Q |
17 |
ttaacacaaaaaatttcacctttaagataacgagataaagtcaatattgctcaacaaatttcatagcaagttgcaatacatatttcatcaacaattgaac |
116 |
Q |
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| T |
30916757 |
ttaacacaaaaaatttcacctttaagataacaagataaagtcaatattgctcaacgaatttcatagcaagttgcaatacatatttcatcaacaatcaaac |
30916856 |
T |
|
| Q |
117 |
gcaaaatattgttctttaaacataagactattcatcatatgattatcatcatcaatgacgagttcgggatttttccttaaaagaatcctctttggattta |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30916857 |
gcaaaatattgttctttaaacataagactattcttcatatgattatcatcatcaatgacgagttcaggatttttccttaaaagaatcctctttggattta |
30916956 |
T |
|
| Q |
217 |
ccaacaaaatgca-ttgtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgaccttgggcgcaactattacaaactggatcaag |
315 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30916957 |
ccaacaaaatgcatttgtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgacctagggcgcaactattacaaactggatcaag |
30917056 |
T |
|
| Q |
316 |
acccataatcttcattgtctaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctc |
390 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30917057 |
acccataatcttcgttgtgtaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctc |
30917131 |
T |
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