View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_19 (Length: 385)
Name: NF8909_low_19
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 375
Target Start/End: Original strand, 43770988 - 43771341
Alignment:
| Q |
22 |
ccgggcagggtctcattggctggtggatggttaaaagtggtttagaggttggaacataaagaaaataatctgtttgtttcaagtccaattgactaactca |
121 |
Q |
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| T |
43770988 |
ccgggcagggtctcattggctggtggatggttaaaagtggtttagaggttggaacataaagaaaataatctgtttgtttcaagtccaattgactaactca |
43771087 |
T |
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| Q |
122 |
tccagattctaataccatagtttcttttcctcaggaaccaccaactgaatattctcagccaagagtaagcccttatcgtctcgcagctcacctcacatca |
221 |
Q |
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| T |
43771088 |
tccagattctaataccatagtttcttttcctcaggaaccaccaactgaatattctcagccaagagtaagcccttatcgtctcgcagctcacctcacatca |
43771187 |
T |
|
| Q |
222 |
gcatttgctatttactgcggtctcttttggactgcactttctgttgttatgcctgagccaccggctgaatcactgacatgggtccgtggggctgctaaag |
321 |
Q |
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| T |
43771188 |
gcatttgctatttactgcggtctcttttggactgcactttctgttgttatgcctgagccaccggctgaatcactgacatgggtccgtggggctgctaaag |
43771287 |
T |
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| Q |
322 |
taaagagacttgcgttgcctgtcagcttactcgttggtcttactgctgtctctg |
375 |
Q |
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| T |
43771288 |
taaagagacttgcgttgcctgtcagcttacttgttggtcttactgctgtctctg |
43771341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 42357376 - 42357726
Alignment:
| Q |
22 |
ccgggcagggtctcattggctggtggatggttaaaagtggtttagaggttggaacataaagaaaataat--ctgtttgtttcaagtccaattgactaact |
119 |
Q |
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| T |
42357376 |
ccgggcagggtctcatcggctggtggatggttaaaagtggtttagaggttggagcataaagaaaagaatatctgtttgtttcaagtccaattgaccagaa |
42357475 |
T |
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| Q |
120 |
catccagattctaataccatagtttcttttcctcaggaaccaccaactgaatattctcagccaagagtaagcccttatcgtctcgcagctcacctcacat |
219 |
Q |
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||||| |||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42357476 |
catcctgattctaatagcat--tttcctt-cctcaggaaccaccaactgaatattctcagccaagagtaagcccttatcgtctcgcagctcaccttacat |
42357572 |
T |
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| Q |
220 |
cagcatttgctatttactgcggtctcttttggactgcactttctgttgttatgcctgagccaccggctgaatcactgacatgggtccgtggggctgctaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||| |
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| T |
42357573 |
cagcatttgctatttactgcggtctcttttggactgcactttctgttgttatgcctgaaccacctgccgaatcactaacatgggtccgtggggcagctaa |
42357672 |
T |
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| Q |
320 |
agtaaagagacttgcgttgcctgtcagcttactcgttggtcttactgctgtctc |
373 |
Q |
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||| ||||||||||| ||||| |||||| |||| |||||||||||||||||||| |
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| T |
42357673 |
agtgaagagacttgcattgcccgtcagcctacttgttggtcttactgctgtctc |
42357726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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