View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_21 (Length: 384)
Name: NF8909_low_21
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 39509472 - 39509846
Alignment:
| Q |
1 |
ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcac |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39509472 |
ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccacattacatttcccattgaaggcctatcacaaccatcatcttgtaagcat |
39509571 |
T |
|
| Q |
101 |
ttttccactatctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttgtctttgcaaa |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
39509572 |
ttttccactttctcactaaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttcaagtatccctttgtctttgcaaa |
39509671 |
T |
|
| Q |
201 |
aaattccccactgagctaagttcacttgttcccttggaagggacggttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |
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| T |
39509672 |
aaattccccactgagctaagttcacttgttcccttggaagtgacggttcaatggctgttcttgcacataatacttcaagtagaaccacgccgaatgaata |
39509771 |
T |
|
| Q |
301 |
cacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacc |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39509772 |
cacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacc |
39509846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 39574389 - 39574745
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||| |||| ||| |||||||| |||||||| ||||||| |
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| T |
39574389 |
ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacacccataatcgtgtaagcatttttccacagtctcact |
39574488 |
T |
|
| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttgtctttgcaaaaaattccccactgagct |
217 |
Q |
| |
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||| |||| ||||||||| ||| |||||| |||||||||||||||||| ||| ||||| | || |||||||||||||||| | |||||||| ||| |
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| T |
39574489 |
aaatattcttagtgagttttgattgatttgtgccttgatggaaggatcaacgatctcttcaagtatccctttgtctttgcaatgcaatccccactcagcc |
39574588 |
T |
|
| Q |
218 |
aagttcacttgttcccttggaagggacggttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctg |
317 |
Q |
| |
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|| || ||||| || |||||| ||| |||| |||||||||||||| ||||| ||||||||||||||||| || || || || ||||| |||||||||| |
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| T |
39574589 |
aaattgacttgctcacttggacaagacagttctatggctggtcttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctg |
39574688 |
T |
|
| Q |
318 |
taagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacac |
374 |
Q |
| |
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|||||||||||||||||||||| || ||||| ||||| || ||||| || ||||||| |
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|
| T |
39574689 |
taagctgttgtgatctaaagtaatccggatcaagatacccaaaagtccctttaacac |
39574745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 39542554 - 39542910
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||| |||||| ||||| |||||||||| ||| |||||||| |||||||| |||| | |
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| T |
39542554 |
ctctctgcagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctgtcacaaccataatcatgtaagcatttttccacagtctcgtt |
39542653 |
T |
|
| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttgtctttgcaaaaaattccccactgagct |
217 |
Q |
| |
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||| |||| ||||||||| ||| |||||| |||||||||||||||||| ||| ||||| | || |||||||| ||||||||| | |||||||| ||| |
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| T |
39542654 |
aaatattcttagtgagttttgattaatttgcgccttgatggaaggatcaacgatctcttcaagtatccctttgtttttgcaaaacaatccccactcagcc |
39542753 |
T |
|
| Q |
218 |
aagttcacttgttcccttggaagggacggttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctg |
317 |
Q |
| |
|
|| || | ||| || |||||| ||| ||| |||||||||||||| ||||| || |||||||||||||| || || ||||| |||||||||||||||| |
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| T |
39542754 |
aaatttatttgctcacttggacaagacaattcgatggctggtcttgcgcacaacacctcaagtagaaccaccccaaaagaataaacatcagatttttctg |
39542853 |
T |
|
| Q |
318 |
taagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacac |
374 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||| || ||||| || ||||||| |
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| T |
39542854 |
taagctgttgtgctctaaagtaatcaggatcaagatacccaaaagtccctttaacac |
39542910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 39578922 - 39579279
Alignment:
| Q |
18 |
ctctctgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatcacaaccatcatcttgtaagcacttttccactatctcact |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||| |||| || ||||||| |
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|
| T |
39578922 |
ctctctgaagctgcaaagcatattccaagtcccacaacacatcaaccattgttggcctatcacaaccacgatcttgtaagcattttttcatggtctcact |
39579021 |
T |
|
| Q |
118 |
aaactttctaagtgagtttggatcaatttgtcccttgatggaaggatcaatgatatcttccaatagccctttgtctttgcaaaaaattccccactgagct |
217 |
Q |
| |
|
||| |||||||||||||| ||| |||||| ||||||| || ||||||| || |||| | | ||||||||||||||||| | |||||||| ||| |
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| T |
39579022 |
aaatattctaagtgagttttgattgatttgtgccttgatagagggatcaacaatctctttaagtgtccctttgtctttgcaaagcaatccccactcagcc |
39579121 |
T |
|
| Q |
218 |
aagttcacttgttcccttggaagggacggttcaatggctggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctg |
317 |
Q |
| |
|
|| || ||||| || |||||| ||| |||| |||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| |||||||||| |
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| T |
39579122 |
aaattgacttgctcacttggacaagacagttcgatggctggtcttgcgcacaacacttcaagtagaaccaccccaaaagaataaacatcggatttttctg |
39579221 |
T |
|
| Q |
318 |
taagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacc |
375 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||| ||||| || ||||| || |||||||| |
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| T |
39579222 |
taaggtgtagtgatctaaagtaatcaggatcaagatacccaaaagtccctttaacacc |
39579279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39516540 - 39516592
Alignment:
| Q |
1 |
ttctctgtgtactgcacctctctgaagctgcaaagaatattccaagtcccaca |
53 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39516540 |
ttctctatgtactgcacctctctgaagctgcaaagaatattccaagtcccaca |
39516592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 22901304 - 22901374
Alignment:
| Q |
257 |
ggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttg |
327 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| || || ||||||||||| || ||||||||||| || ||||| |
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| T |
22901304 |
ggtcttgcacacagaacctcaagcagaactaccccaaatgaatacacgtccgatttttctgttagttgttg |
22901374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 22952972 - 22953042
Alignment:
| Q |
257 |
ggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttg |
327 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| || || ||||||||||| || ||||||||||| || ||||| |
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| T |
22952972 |
ggtcttgcacacagaacctcaagcagaactaccccaaatgaatacacgtccgatttttctgttagttgttg |
22953042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 4652414 - 4652471
Alignment:
| Q |
256 |
tggtcttgcacacaaaacttcaagtagaaccacgccgaatgaatacacatcagatttt |
313 |
Q |
| |
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|||||| |||||||| || ||||| || ||||| |||||||| ||||||||||||||| |
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|
| T |
4652414 |
tggtctagcacacaacacctcaagaagcaccacaccgaatgagtacacatcagatttt |
4652471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 13973328 - 13973384
Alignment:
| Q |
23 |
tgaagctgcaaagaatattccaagtcccacaaaacatcgcccattgaaggcctatca |
79 |
Q |
| |
|
||||||||||| | ||||||||| | ||| | |||||| |||||||||||||||||| |
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|
| T |
13973328 |
tgaagctgcaatgcatattccaaattccaaagaacatctcccattgaaggcctatca |
13973384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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