View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_24 (Length: 364)
Name: NF8909_low_24
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 40 - 330
Target Start/End: Complemental strand, 32681928 - 32681638
Alignment:
| Q |
40 |
accttggttcatattccaacacctcaacaagcttgtttccaatggtatcagtccactgcactctcctacatgtcttatccaattttcgagccattcctcc |
139 |
Q |
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| T |
32681928 |
accttggttcatattccaacacctcaacaagcttgtttccaatggtatcagtccactgcactctcctacatgtcttatccaattttcgagccattcctcc |
32681829 |
T |
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| Q |
140 |
tcttttagggagtgtcgtcaacaaagaattggaatcactatcactttttccattgacatgaccatgatcttcaacctttttacaatccaaagaagccaca |
239 |
Q |
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| T |
32681828 |
tcttttagggagtgtcgtcaacaaagaattggaatcactatcactttttccattgacatgaccatgatcttcaacctttttacaatccaaagaagccaca |
32681729 |
T |
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| Q |
240 |
tccacaggcttattcacagagccattagcagtatccattttggtcacagtatcatccatcatcaacaacaagtagcaacactcttccaaga |
330 |
Q |
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| T |
32681728 |
tccacaggcttattcacagagccattagcagtatccattttggtcacagtatcatccatcatcaacaacaagtagcaacactcttccaaga |
32681638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 17007768 - 17007736
Alignment:
| Q |
40 |
accttggttcatattccaacacctcaacaagct |
72 |
Q |
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| T |
17007768 |
accttggttcatattccaacacctcagcaagct |
17007736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 38677118 - 38677222
Alignment:
| Q |
215 |
ctttttacaatccaaagaagccacatccacaggcttattcacagagccattagcagtatccattttggtcacagtatcatccatcatcaacaacaagtag |
314 |
Q |
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| T |
38677118 |
ctttttacaattcaaagaagccacatccacatgcttattcacag--ccattatcagtatcctttttggtcacagtatcatccatcatcaacaacaagtaa |
38677215 |
T |
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| Q |
315 |
caacact |
321 |
Q |
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||||||| |
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| T |
38677216 |
caacact |
38677222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 11343272 - 11343356
Alignment:
| Q |
234 |
gccacatccacaggcttattcacagagccattagcagtatccattttggtcacagtatcatccatcatcaacaacaagtagcaacact |
321 |
Q |
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|||||||||||| | |||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
11343272 |
gccacatccacatgtttattcacag--ccataatcagtatcc-ttttggtcacagtatcatccatcatcaacaagaagtaacaacact |
11343356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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