View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_29 (Length: 345)
Name: NF8909_low_29
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 25867628 - 25867948
Alignment:
| Q |
10 |
aattgagattgatgaaaacaatattaattagatagtacaattgaagnnnnnnnngtaactaatgttttgttgaaaatctaaaaggtgagacaaatttttg |
109 |
Q |
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| T |
25867628 |
aattgagagtgatgaaaacaatattaattagatggtacaattgaagaaaaaaaagtaactaatgttttgttgaaaatctaaaaggtgagacaaatttttg |
25867727 |
T |
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| Q |
110 |
ttggaaaaagatcaattattttggnnnnnnnnnntacannnnnnn-gtggttataataaactttnnnnnnnttatgaatccgaggaaagcatgatagtta |
208 |
Q |
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| T |
25867728 |
ttggaaaaagatcaattattttggaacaaagaaatacattttttttgtggttataacaaactttaaaaaaattatgaatccgaggaaagcaggatagtta |
25867827 |
T |
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| Q |
209 |
tgaatattgtaagtgaagaacagcacaaaaagcatctaagaaaatcaacaaaagttttgtccataagtaaaagtgtaaaacgaatactacattctttgat |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867828 |
tgaatattgtaagtgaagaacagcataaaaagcatctaagaaaatcaacaaaagttttgtccataagtaaaagtgtaaaacgaatactacattctttgat |
25867927 |
T |
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| Q |
309 |
tcaaaaattatctaagccatg |
329 |
Q |
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|||||||||||||||| |||| |
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| T |
25867928 |
tcaaaaattatctaagtcatg |
25867948 |
T |
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