View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_3 (Length: 679)
Name: NF8909_low_3
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 227 - 667
Target Start/End: Original strand, 41845864 - 41846304
Alignment:
| Q |
227 |
tagcagagtcactgattcaagatagatcatattataagctatgtctcaagacaagtgaaacaaagtcatttatcaaatgttacaaatagaaaacaataaa |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41845864 |
tagcagagtcactgattcaagatagatcatattataagctatgtctcaagacaagtgcaacaaagtcatttatcaaatattacaaatagaaaacaataaa |
41845963 |
T |
|
| Q |
327 |
taacaactcatgcaatttaaataacgatgcaattagaagaggattaaagagatcagttccattccatcgtcgagcaatgaataacactagtgctattaag |
426 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41845964 |
taacaactcatgcaatttaaataaccatgcaattagaagaggattaaagagatcagttccattccatcgttgagcaatgaataacactagtgctattaag |
41846063 |
T |
|
| Q |
427 |
ctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgat |
526 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846064 |
ctaagcaatcttcagtcgtggcaagtgaaggtgaaagtgaatcgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgat |
41846163 |
T |
|
| Q |
527 |
catcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttc |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846164 |
catcttaacaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttc |
41846263 |
T |
|
| Q |
627 |
ttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
667 |
Q |
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| T |
41846264 |
ttgtacctcaaaagttcttgatcaaacacctctgatgtcca |
41846304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 41845657 - 41845798
Alignment:
| Q |
76 |
accagcaaatatgccccacaggcccacatcatatcattcgcatttactatttgttgcaaaatgattgaatgaatnnnnnnnnnnnnnnngatttttaaac |
175 |
Q |
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| T |
41845657 |
accagcaaatatgccccacaggcccacatcatatcattcgcatttactatttgttgcaaaatgattgaatgaat-aaaaaaaggaaaaagatttttaaac |
41845755 |
T |
|
| Q |
176 |
aaccaaaccaaatccaaagacagatgtaaatttaaccctcatt |
218 |
Q |
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| T |
41845756 |
aaccaaaccaaatccaaagacagatgtaaatttaaccctcatt |
41845798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 41848965 - 41848898
Alignment:
| Q |
15 |
cttccaaacccataatcaattgccacctttatcatcatattcctccaatcctaattaccttaccagca |
82 |
Q |
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| T |
41848965 |
cttccaaacccataatcagttgccacctttatcatcatattcccccaatcctaattaccttaccagca |
41848898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 434 - 658
Target Start/End: Complemental strand, 26890927 - 26890703
Alignment:
| Q |
434 |
atcttcagtcgtggcaagtgaaggtgaaagtgaattgcgagattcatcataatcctctcttagaggagattgttccaccctaatatcctcgatcatctta |
533 |
Q |
| |
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||||||||| |||| || ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||| ||||| || |||||||| ||||| ||| |
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| T |
26890927 |
atcttcagtggtgggaatggaaggtgaaagcgaattgcgtgattcgtcatagtcctcacacagaggagattgctccactctgatatcctcaatcatttta |
26890828 |
T |
|
| Q |
534 |
acaacatccaacattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacc |
633 |
Q |
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| T |
26890827 |
acaacatctaccatagttggcctcttctctggctgctgcaccacacaagccaacccaacatgcagcattgacacaagctcttcctcaatgttcttgtatc |
26890728 |
T |
|
| Q |
634 |
tcaaaagttcttgatcaaacacctc |
658 |
Q |
| |
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|| ||||||||||||||| ||||| |
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| T |
26890727 |
gcagaagttcttgatcaaaaacctc |
26890703 |
T |
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