View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8909_low_30 (Length: 341)

Name: NF8909_low_30
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8909_low_30
NF8909_low_30
[»] chr3 (1 HSPs)
chr3 (53-341)||(1256819-1257107)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 53 - 341
Target Start/End: Complemental strand, 1257107 - 1256819
Alignment:
Q  53 ccctctattggccctgatatatttggctctggggttgcttggaagcgttttgaattggagcaagggagtcaacgtaaatataaggtggatgatgatactt 152  Q
    |||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1257107 ccctctataggccgtgatatttttggctctgggattgcttggaagcgttttgaattggagcaagggagtcaacgtaaatataaggtggatgatgatactg 1257008  T
Q  153 tatttgttgtagatttgacatagattgattaacatatatgtttatatgaaattttttgtatgaattattttacatagcattatattatgtgtaaaattgt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1257007 tatttgttgtagatttgacatagattgattaacatatatgtttatatgaaattttttgtatgaattattttacatagcattatattatgtgtaaaattgt 1256908  T
Q  253 tgttgatgtgaaattccttgagtgaattttcgttaaggtgaaattgcttgttgatacttgttatgatattggattatattttgctaaat 341  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1256907 tgttgatgtgaaattccttgagttaatttttgttaatgtgaaattgcttgttgatacttgttatgatattggattatattttgctaaat 1256819  T

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