View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8909_low_37 (Length: 296)

Name: NF8909_low_37
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8909_low_37
NF8909_low_37
[»] chr8 (6 HSPs)
chr8 (12-296)||(34866558-34866842)
chr8 (11-263)||(34389513-34389765)
chr8 (59-215)||(10551685-10551841)
chr8 (71-196)||(9519017-9519142)
chr8 (109-214)||(37987529-37987634)
chr8 (27-82)||(31210604-31210658)
[»] chr7 (6 HSPs)
chr7 (12-258)||(38305574-38305820)
chr7 (12-217)||(3420160-3420365)
chr7 (27-192)||(47326387-47326551)
chr7 (58-191)||(37792712-37792845)
chr7 (92-233)||(38484915-38485055)
chr7 (92-148)||(12480298-12480355)
[»] chr1 (6 HSPs)
chr1 (26-258)||(41919796-41920028)
chr1 (12-246)||(24685011-24685243)
chr1 (54-233)||(4651145-4651322)
chr1 (88-191)||(17032835-17032939)
chr1 (71-161)||(31586261-31586351)
chr1 (94-146)||(24450450-24450501)
[»] chr4 (8 HSPs)
chr4 (12-258)||(30963777-30964023)
chr4 (17-233)||(35799957-35800173)
chr4 (76-190)||(16501154-16501268)
chr4 (72-193)||(31051212-31051333)
chr4 (54-148)||(46699473-46699566)
chr4 (73-135)||(4305075-4305135)
chr4 (60-162)||(38929125-38929227)
chr4 (74-133)||(7702937-7702994)
[»] chr6 (3 HSPs)
chr6 (16-268)||(16510794-16511045)
chr6 (54-173)||(12793536-12793655)
chr6 (54-120)||(9223377-9223443)
[»] chr3 (6 HSPs)
chr3 (12-246)||(19175830-19176062)
chr3 (27-233)||(20611145-20611349)
chr3 (53-193)||(1653458-1653598)
chr3 (18-169)||(17501741-17501891)
chr3 (55-135)||(30935940-30936017)
chr3 (54-122)||(25595151-25595219)
[»] chr2 (7 HSPs)
chr2 (30-256)||(39339351-39339574)
chr2 (32-171)||(31902906-31903044)
chr2 (54-167)||(2062247-2062360)
chr2 (54-161)||(22886030-22886137)
chr2 (54-193)||(27739128-27739268)
chr2 (92-157)||(29486398-29486463)
chr2 (78-134)||(25505550-25505606)
[»] chr5 (3 HSPs)
chr5 (94-193)||(27712379-27712478)
chr5 (109-214)||(697664-697769)
chr5 (78-134)||(8730301-8730357)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 34866558 - 34866842
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||    
T  34866558 catcaccaccaccgtcactgcatcactacgccacaaaaatatcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaac 34866657  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  34866658 aacaaaacacgggcagcgacgccggtttgaagcggaaccacaacccaggtcataaaaaggcggtcgcctgtgacaaggagaatgttttcgtcgccgtagt 34866757  T
Q  212 aaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacctactcacatcaccaccaccacacaacct 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34866758 aaaagagaatcaatggtggagcaaaaatggcggatttgaacaacactacccgcaacctactcacatcaccaccaccacacaacct 34866842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 34389513 - 34389765
Alignment:
Q  11 acatcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaa 110  Q
    |||| ||||||||| ||| |||||||||||||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||| |||||||| | |    
T  34389513 acattaccaccaccatcattgcatcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattcca 34389612  T
Q  111 caacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtag 210  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||  |||||| ||||||    
T  34389613 caacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgtcgccgtag 34389712  T
Q  211 taaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccg 263  Q
    |||||||||| ||||||||||||||||||||| ||| |||| |||||| ||||    
T  34389713 taaaagagaaccaatggtggagcaaaaacggcagatctgaataacacttcccg 34389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 10551841 - 10551685
Alignment:
Q  59 ccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccca 158  Q
    |||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||| ||||     
T  10551841 ccaagaaatagacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgacccc 10551742  T
Q  159 gatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaa 215  Q
    |||||||||||||| | || | |||||||||||||  | || ||||||| |||||||    
T  10551741 gatcataaaaaggctgtcgtcggtgacaaggagaagacatttgtcaccggagtaaaa 10551685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 9519142 - 9519017
Alignment:
Q  71 cagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaag 170  Q
    |||||| ||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||| | ||||||||| ||  ||| ||     
T  9519142 cagcaatacaaacacaaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaat 9519043  T
Q  171 gcggccgcctgtgacaaggagaatgc 196  Q
    |  ||| ||| |||||||||||||||    
T  9519042 gttgccacctttgacaaggagaatgc 9519017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 37987529 - 37987634
Alignment:
Q  109 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 208  Q
    ||||||| |||||||| |||||||||| | |||||||||| | ||||| ||||| |||| | ||  ||||| ||||||||||||| |||| || |||||     
T  37987529 aacaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccga 37987628  T
Q  209 agtaaa 214  Q
    ||||||    
T  37987629 agtaaa 37987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 31210604 - 31210658
Alignment:
Q  27 cactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaa 82  Q
    ||||||||||||||||| |||||  ||| ||||||||||| |||||||||||||||    
T  31210604 cactgcatcactacgccgccaaac-atcgtcaccaagaaacaggcagcaacacaaa 31210658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 38305820 - 38305574
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||    
T  38305820 catcaccaccaccgtcactgcatcactacgccaccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaac 38305721  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||| |||||  ||||||||||| ||||||||| |||||||| |||||| |||||||    
T  38305720 aacaaaacacaggcagcaacgccggtttgaagcggaaccacaacccatatcatttaaaggcggccgactgtgacaacgagaatgcgttcgtcgccgtagt 38305621  T
Q  212 aaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 258  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  38305620 aaaagagagccaatggtggagcaaaaacggcggatatgaacagcact 38305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 3420160 - 3420365
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    |||||||||||| ||||||||||||||||| | |||||| ||||||||||||||| | ||| |||||||  ||||||| ||||||||||||||| | |||    
T  3420160 catcaccaccactgtcactgcatcactacgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaac 3420259  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
    ||||||||||| | |||||||||| || ||||||||||||||||| ||||||||||||||||| | ||||| ||| ||||||||| |||||| |||||||    
T  3420260 aacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgttcgtcgccgtagt 3420359  T
Q  212 aaaaga 217  Q
    ||||||    
T  3420360 aaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 47326387 - 47326551
Alignment:
Q  27 cactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaa 126  Q
    ||||||||||||||||| |||||  ||||||||||||||| | ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |    
T  47326387 cactgcatcactacgccgccaaac-atcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggca 47326485  T
Q  127 gcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggaga 192  Q
    ||||| ||||||||||| | || ||||||| | |||||| ||||||||||||| ||||||||||||    
T  47326486 gcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 37792845 - 37792712
Alignment:
Q  58 accaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 157  Q
    ||||||||| || ||||||||||||||   ||| |||| |||| |||| |||||| ||||||||||  | |||||||| |||||||||||| ||||||||    
T  37792845 accaagaaacagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaaccc 37792746  T
Q  158 agatcataaaaaggcggccgcctgtgacaaggag 191  Q
    | ||| |||||||||   |||| |||||||||||    
T  37792745 atatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 38485055 - 38484915
Alignment:
Q  92 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 191  Q
    |||||||||||||| |  ||||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T
Q  192 aatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 233  Q
    ||  | |  ||| ||| ||||||| |||| ||||||||||||    
T  38484956 aagacatctgtcgccggagtaaaatagaaacaatggtggagc 38484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12480355 - 12480298
Alignment:
Q  92 agaggaagac-gaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 148  Q
    |||||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||    
T  12480355 agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 41920028 - 41919796
Alignment:
Q  26 tcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacggga 125  Q
    |||||||||||||||||| |||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||     
T  41920028 tcactgcatcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggc 41919929  T
Q  126 agcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaat 225  Q
    | |||||| | |||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||  |||||  |||||||||||||||| ||||    
T  41919928 aacgacgctggtttgaagcggaaccacaacccagatcattaaatggcggcagcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaat 41919829  T
Q  226 ggtggagcaaaaacggcggatttgaacaacact 258  Q
    ||||||||||||||||||||| |||||||||||    
T  41919828 ggtggagcaaaaacggcggatctgaacaacact 41919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 24685011 - 24685243
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    |||||||||||  ||||||||||||||||||| |||||  ||||||||||||||| | ||| ||||||||||||||||||| ||  |||| |||| ||||    
T  24685011 catcaccaccattgtcactgcatcactacgccgccaaac-atcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaac 24685109  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||  |||||| |||||||    
T  24685110 aacaaaacacgggcagcgacgccggtttgaagcagaaccacaacccatatcataaaaagctggccgcctgtgacaaggagaatgtgttcgtcgccgtagt 24685209  T
Q  212 aaaagagaatcaatggtggagcaaaaacggcggat 246  Q
    |||| |||| ||||||||||||||||| |||||||    
T  24685210 aaaa-agaaccaatggtggagcaaaaatggcggat 24685243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 4651322 - 4651145
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 153  Q
    ||||||||||||| || |||||||||||||||| |||  ||||||||||||| | |||||||||||||  | |||||| ||| ||||||||||||  |||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa--aca 4651225  T
Q  154 acccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 233  Q
    || | |||  ||||||||| |||| | |||| ||||||||  | |  ||| ||| |||||||||||||||||||||||||    
T  4651224 actccgattgtaaaaaggcagccgtcagtgataaggagaagacatctgtcgccggagtaaaagagaatcaatggtggagc 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 17032939 - 17032835
Alignment:
Q  88 atctagaggaagacgaaatccaacaac-aaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgaca 186  Q
    ||||||||||||||||||||||||||| ||||||| || || ||| ||| | |||||| ||| |||||||| ||||| ||||| | ||||||| ||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgaca 17032840  T
Q  187 aggag 191  Q
    |||||    
T  17032839 aggag 17032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 31586261 - 31586351
Alignment:
Q  71 cagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 161  Q
    |||||||||  ||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||| | |||||||| | ||| ||||||||    
T  31586261 cagcaacactgacacaaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 24450450 - 24450501
Alignment:
Q  94 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgg 146  Q
    ||||||| |||| |||||||||||||||||| |||||||| | ||||||||||    
T  24450450 aggaagatgaaacccaacaacaaaacacgggcagcgacgcag-tttgaagcgg 24450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 30964023 - 30963777
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    |||||||||||||||||||   | |||||||| |||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  30964023 catcaccaccaccgtcactatgtaactacgcctccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaac 30963924  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
     |||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||||   |||||    
T  30963923 cacaaaacacgggcatcgacgccggtttgaagtggaaccacaacccagatcataaaaagatggtcgcctgtgacaaggagaatgcgttcgtcgttgtagt 30963824  T
Q  212 aaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 258  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  30963823 aaaagagaaccaatggtggagaaaaaacggcggatctgaacagcact 30963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 35800173 - 35799957
Alignment:
Q  17 ccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaa 116  Q
    ||||||||  |||| ||| |||||||| |||||| | || |||||||||| ||||||||||||||| | | ||||| || || |||||| | |  | |||    
T  35800173 ccaccaccaccactacattactacgccgccaaaacagccccaccaagaaacaggcagcaacacaaatacatatctaaagaaaaacgaaacctattagcaa 35800074  T
Q  117 aacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaag 216  Q
    |||||||| | ||||||||||||||| ||||| || |||||| | | ||||||||||| || | || |||||||||| || | |||||||| |||| |||    
T  35800073 aacacgggcaacgacgccgatttgaaacggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtacaag 35799974  T
Q  217 agaatcaatggtggagc 233  Q
    |||| ||||||||||||    
T  35799973 agaaccaatggtggagc 35799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 16501268 - 16501154
Alignment:
Q  76 acacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggc 175  Q
    ||||||||| |||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||| ||| || |||| ||||    
T  16501268 acacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggc 16501169  T
Q  176 cgcctgtgacaagga 190  Q
    |||| ||||||||||    
T  16501168 cgccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 31051212 - 31051333
Alignment:
Q  72 agcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 171  Q
    |||||||| |||| ||||||| ||||||| | || |||||||||||||||||| |||||||||| | |||||||||  ||||||||| ||| ||||||||    
T  31051212 agcaacaccaacacaaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaagg 31051311  T
Q  172 cggccgcctgtgacaaggagaa 193  Q
    ||||| ||  | ||||||||||    
T  31051312 cggccaccgataacaaggagaa 31051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 46699473 - 46699566
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 148  Q
    ||||||||||| | ||||| |||| |||||| | ||| | ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  46699473 cctcaccaagacacaggcatcaac-caaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 4305135 - 4305075
Alignment:
Q  73 gcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccg 135  Q
    |||| |||||||| |||||||   |||||||||||||||||||||||||||| ||||||||||    
T  4305135 gcaagacaaacattaatctagc--aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 38929227 - 38929125
Alignment:
Q  60 caagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccag 159  Q
    ||||||| ||||| |||| ||||  |||||| | ||||||| || | | |||||||||||||||| || ||||||| | |||||||||| ||||||| ||    
T  38929227 caagaaacaggcaacaacccaaagctaaatcaaaaggaagatgataactaacaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctag 38929128  T
Q  160 atc 162  Q
    |||    
T  38929127 atc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 7702994 - 7702937
Alignment:
Q  74 caacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgc 133  Q
    |||||||||||| |||||||   ||||||||||||||||||||||||| || ||||||||    
T  7702994 caacacaaacatcaatctagc--aagacgaaatccaacaacaaaacacaggcagcgacgc 7702937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 16510794 - 16511045
Alignment:
Q  16 accaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaaca 115  Q
    ||||||||| ||||| |||||||||||| ||||   ||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||    
T  16510794 accaccaccatcactacatcactacgccgccaacc-atcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaaca 16510892  T
Q  116 aaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaa 215  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||||| | ||| ||||||||||||||||  ||| || |||||||||||    
T  16510893 aaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaaggcagtcgcttgtgacaaggagaatgtgttcatctccgtagtaaaa 16510992  T
Q  216 gagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacc 268  Q
    ||||| ||||||||||||||||||||||| | |||||| |||| |||| ||||    
T  16510993 gagaaacaatggtggagcaaaaacggcggttctgaacagcacttcccggaacc 16511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 12793655 - 12793536
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 153  Q
    ||||||||||||| || ||||||||||||  || ||| |||||||||||||||||| || ||||||||||| | |||||||  ||||||||| || ||||    
T  12793655 cctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacaca 12793556  T
Q  154 acccagatcataaaaaggcg 173  Q
    ||||| ||| ||||||||||    
T  12793555 acccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 9223443 - 9223377
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaaca 120  Q
    ||||||||||||| |||  |||||||||||| ||||  |||||||||||||||||||||||||||||    
T  9223443 cctcaccaagaaacaggaggcaacacaaacacaaattcagaggaagacgaaatccaacaacaaaaca 9223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 19176062 - 19175830
Alignment:
Q  12 catcaccaccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaac 111  Q
    |||||||||||| |||||| ||||| |||||| |||||  ||||||||||||||| | ||| || |||||||||||||||| ||| |||| |||||||||    
T  19176062 catcaccaccactgtcactacatcattacgccgccaaac-atcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaac 19175964  T
Q  112 aacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagt 211  Q
    ||||||||||||| ||||| |||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  19175963 aacaaaacacgggcagcgatgccggtttgaagaggaaccacaacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgtcgccgtagt 19175864  T
Q  212 aaaagagaatcaatggtggagcaaaaacggcggat 246  Q
    |||| |||| |||||||||||||||||||||||||    
T  19175863 aaaa-agaaccaatggtggagcaaaaacggcggat 19175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 20611349 - 20611145
Alignment:
Q  27 cactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaa 126  Q
    ||||||||||||| ||| |||||  ||||||||||||||| ||||| ||||||||| ||| ||||||| ||||| ||||||||||||||||||||| | |    
T  20611349 cactgcatcactatgccgccaaac-atcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacgagca 20611251  T
Q  127 gcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatg 226  Q
    |||||| || ||||||| | || ||||||| | |||||| |||||||||||||  |||||||||| | || ||||||  || |||||||||||| |||||    
T  20611250 gcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaaggag-aggcgttcgtcggcggagtaaaagagaaccaatg 20611152  T
Q  227 gtggagc 233  Q
    |||||||    
T  20611151 gtggagc 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 193
Target Start/End: Original strand, 1653458 - 1653598
Alignment:
Q  53 tcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccac 152  Q
    ||||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||  ||    
T  1653458 tcctcacgaagaaacaggcagcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagac 1653557  T
Q  153 aacccagatcataaaaaggcggccgcctgtgacaaggagaa 193  Q
    |||||||||| ||| ||||  |||||| |||||||||||||    
T  1653558 aacccagatcgtaacaaggttgccgccagtgacaaggagaa 1653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 17501741 - 17501891
Alignment:
Q  18 caccaccgtcactgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaa 117  Q
    |||||||  ||||| ||||||||||  |||||  ||||||||||| ||| ||| ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  17501741 caccaccaccactgtatcactacgctgccaaac-atcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaa 17501839  T
Q  118 acacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaa 169  Q
    ||||||  |  |||| |  |||||||||||| ||||||| ||||| ||||||    
T  17501840 acacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 30935940 - 30936017
Alignment:
Q  55 ctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccg 135  Q
    |||||||||||| || || ||||| ||||||||||||||||   ||||||| |||||||||||||||||  ||||||||||    
T  30935940 ctcaccaagaaacagacaacaacaaaaacataaatctagag---gacgaaacccaacaacaaaacacggacagcgacgccg 30936017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 25595151 - 25595219
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacg 122  Q
    ||||||||||||| | ||||||||||||| | |||||||||||| |||||||   ||||||||||||||    
T  25595151 cctcaccaagaaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaacacg 25595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 39339351 - 39339574
Alignment:
Q  30 tgcatcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcg 129  Q
    |||||||||||||| |||||  ||||||||||||||| || |||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||||    
T  39339351 tgcatcactacgccgccaaac-atcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcg 39339449  T
Q  130 acgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtg 229  Q
    ||| || ||||||| | || ||||||| | |||||| ||||||||||||| ||||||||||| | || ||||||  || |||||||||||| ||||||||    
T  39339450 acgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggag-aggcgttcgtcggcggagtaaaagagaaccaatggtg 39339548  T
Q  230 gagcaaaaacggcggatttgaacaaca 256  Q
    ||||   |||||||||| |||||||||    
T  39339549 gagc-gtaacggcggatctgaacaaca 39339574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 31902906 - 31903044
Alignment:
Q  32 catcactacgccaccaaaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgac 131  Q
    |||||||||||| ||||| || ||||| ||||||| |  ||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  31902906 catcactacgccgccaaa-tagcctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgac 31903004  T
Q  132 gccgatttgaagcggaaccacaacccagatcataaaaagg 171  Q
    |||| |||||||||||| ||||||| ||||||||||||||    
T  31903005 gccggtttgaagcggaaacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 2062360 - 2062247
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 153  Q
    |||||||||||||  || ||| ||||||||| | ||| |||| |||| | || |||||||||||||||||| |||||||||| | |||||||||| ||||    
T  2062360 cctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacaca 2062261  T
Q  154 acccagatcataaa 167  Q
    ||||||||| ||||    
T  2062260 acccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 22886030 - 22886137
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 153  Q
    ||||||||||||| | |||||||||||   | | ||| ||||||||| |||| |||||||||||||||||  |||||||||  | |||||||||| || |    
T  22886030 cctcaccaagaaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaa 22886129  T
Q  154 acccagat 161  Q
    ||||||||    
T  22886130 acccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 27739268 - 27739128
Alignment:
Q  54 cctcaccaagaaagaggcagcaacacaaa-cataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccac 152  Q
    ||||| ||||||| | ||||| ||||||| || ||||| ||||||||| |||| | ||||||||||||| || ||||||| ||   |||||||||| |||    
T  27739268 cctcatcaagaaacaagcagccacacaaatcacaaatcaagaggaagatgaaaccaaacaacaaaacacaggcagcgacgtcgccctgaagcggaaacac 27739169  T
Q  153 aacccagatcataaaaaggcggccgcctgtgacaaggagaa 193  Q
    ||| ||||||  ||||||| |||| |  |||||||| ||||    
T  27739168 aacgcagatcgaaaaaaggtggccactagtgacaagaagaa 27739128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 29486463 - 29486398
Alignment:
Q  92 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 157  Q
    ||||| |||||||| | |||||||||||  ||| |||||||||| | |||||||||| ||||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 25505550 - 25505606
Alignment:
Q  78 acaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgcc 134  Q
    ||||| ||| ||| |||||||||||||  | |||||||||||||||| |||||||||    
T  25505550 acaaaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgcc 25505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 27712478 - 27712379
Alignment:
Q  94 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaa 193  Q
    ||||||| |||| |||||||||||||||||| | |||||||| | |||||  ||| ||||| | ||||| |||| ||||  || || |||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaa 27712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 697769 - 697664
Alignment:
Q  109 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 208  Q
    |||||||  ||||||| |||||||||| | |||||||||| | ||||| ||||| |||| ||||    ||| ||||||||||||| |||| || |||||     
T  697769 aacaacagcacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccga 697670  T
Q  209 agtaaa 214  Q
    ||||||    
T  697669 agtaaa 697664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 8730357 - 8730301
Alignment:
Q  78 acaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgcc 134  Q
    ||||| ||| ||| |||||||||||||  | |||||||||||||||| |||||||||    
T  8730357 acaaaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgcc 8730301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University