View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_38 (Length: 276)
Name: NF8909_low_38
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 13973431 - 13973172
Alignment:
| Q |
1 |
aagaaatttgccgaggctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13973431 |
aagaaatttgccgaggctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcattgcagc |
13973332 |
T |
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| Q |
101 |
ttcaagaagcttttacacaaggaaaagttgaggatgagaatgaggctaaatctgctgctgttgttgttcctacttcacctgctcctcctactacaccccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13973331 |
ttcaagaagcttttacacaaggaaaagttgaggatgagaatgaggctaaatctgctgctgttgttgttcctacttcacctgctcctcctactacaccccc |
13973232 |
T |
|
| Q |
201 |
ctctgttactgattgtccccccacacctcctcaacaagaagtaaataatagtcctgctga |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13973231 |
ctctgttactgattgtccccccacacctcctcaacaagaagtaaataatagtcctgctga |
13973172 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 41048371 - 41048281
Alignment:
| Q |
17 |
ctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagcttcaaga |
107 |
Q |
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| T |
41048371 |
ctgctgagaaatgtttggctgattatggtgttgacaggccttccatgggagatgtcttgtggaatttggaatatgctcttcaacttcaaga |
41048281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 22901157 - 22901067
Alignment:
| Q |
17 |
ctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagcttcaaga |
107 |
Q |
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| T |
22901157 |
ctgctgaaaaatgtttggctgattttggtgttgataggccttccatgggagatgtattgtggaatttggagtatgctcttcaacttcaaga |
22901067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 22952825 - 22952735
Alignment:
| Q |
17 |
ctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagcttcaaga |
107 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||| ||||| || || |||||||| |
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| T |
22952825 |
ctgctgaaaaatgtttggctgattttggtgttgataggccttccatgggagatgtattgtggaatttggagtatgctcttcaacttcaaga |
22952735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 45191878 - 45191911
Alignment:
| Q |
24 |
gaaatgtttggctgatcatggtgttgataggcct |
57 |
Q |
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| T |
45191878 |
gaaatgtttggctgatcatggagttgataggcct |
45191911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17350228 - 17350335
Alignment:
| Q |
1 |
aagaaatttgccgaggctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagc |
100 |
Q |
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|||||||||| ||| | || |||||||||||||| || | || ||||||||||| |||||||| ||||| | ||||||||||||||| |||| |||| |
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| T |
17350228 |
aagaaatttggcgaaacagcagagaaatgtttggccgaatacggagttgataggccgtcaatgggtgatgtattgtggaatttggaatattcacttcagc |
17350327 |
T |
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| Q |
101 |
ttcaagaa |
108 |
Q |
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|||||||| |
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| T |
17350328 |
ttcaagaa |
17350335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 45097806 - 45097699
Alignment:
| Q |
1 |
aagaaatttgccgaggctgctgagaaatgtttggctgatcatggtgttgataggccttcaatgggagatgttctttggaatttggaatatgcactgcagc |
100 |
Q |
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|||||||||| ||| | || ||||||||||||||||| ||||||||||||| || | ||||| ||||| | |||||||||||||||||||| |||| |
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| T |
45097806 |
aagaaatttggtgagacagcagagaaatgtttggctgaatatggtgttgatagaccaactatgggtgatgtcttgtggaatttggaatatgcacttcagc |
45097707 |
T |
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| Q |
101 |
ttcaagaa |
108 |
Q |
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| T |
45097706 |
tccaagaa |
45097699 |
T |
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