View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8909_low_4 (Length: 619)
Name: NF8909_low_4
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 613
Target Start/End: Original strand, 43157925 - 43158510
Alignment:
| Q |
17 |
atgatgattatttttctggtcatctagtatctctagatcccaaaaaatgctaaaaccttttggtagataattttatcgaatactttttagcataaaaata |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43157925 |
atgatgattatttttctggccatctagtatctctagatcccaaaaaatgctaaaaccttttggtagataattttaacgaatactttttagcataaaaata |
43158024 |
T |
|
| Q |
117 |
tatcgaagggggttagagtttgttagttactttttattcatagtatgtttctagaaatannnnnnngtataaatttttaaaaatggagaatacatgttag |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43158025 |
tatcgaagggggtt-----------gttactttttattcatagtatgtttttagaaatatttttttgtataaatttttaaaaatggagaatacatgttag |
43158113 |
T |
|
| Q |
217 |
agaaattttgtcaaaagagctttttctaacaatattctagagtaattgaattttaaatattaaaaaattcatgtcgttatctaatgaaaatatttgttgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43158114 |
agaaattttgtcaaaagagctttttctaacaatattctagagtaattgaattttaaatattaaaaaattaatgtcgttatctaatgaaaatatttgttgt |
43158213 |
T |
|
| Q |
317 |
atgttaaatttatttaagttatgtcatttgtcaattatgaatttcttggtgagcgaatcattggtggacatggatttttagaccgttgtataaaaccttc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43158214 |
ctgttaaatttatttaagttatgtcatttgtcaattatgaatttcttggtgagcgaatcattggcggacatggatttttagaccgttgtataaaaccttc |
43158313 |
T |
|
| Q |
417 |
gtcaattgtgtgactctcttgaaaagtgaaaaataaaattagtttttcttcattttgaacatgcgaagctaatttctcgtaattctcttttgtatttttt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43158314 |
gtcaattgtgtgactctcttgaaaagtgaaaaataaaattagcttttcttcattttgaacatgtgaagctaatttctcgtaattctcttttgtatttttt |
43158413 |
T |
|
| Q |
517 |
gtggaggctcattcatagtgaatcaatgagctgctctcccgtaatacgttggtcaacttggacataacaagataaacaattttggtctgtgctgctc |
613 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
43158414 |
gtagaggctcattcatagtgaatcaatgagttgctctcccgtaatacgttggtcaacttggacataacaagataaacaattttggtgtgtgttgctc |
43158510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University