View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_46 (Length: 262)
Name: NF8909_low_46
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 36530876 - 36530766
Alignment:
| Q |
25 |
attgcaatttttgtttgtgcaatttcttgatttggattaaggttgtttagctgctggtttatgcttgctttgtggtggcaatgaatggttttctagagtt |
124 |
Q |
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| T |
36530876 |
attgaaatttttgtttgtgcagtttcttgatttggattaaggttgtttagttgttggtttatgcttgatttttggtggtaatgaattgttttctagagtt |
36530777 |
T |
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| Q |
125 |
gtaaacttgta |
135 |
Q |
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| T |
36530776 |
gtaaacttgta |
36530766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 36530626 - 36530520
Alignment:
| Q |
152 |
actattatttaaaagcaaataatagttaattgtcgttgggatattttcatccattcgaggtacctatgatgcctaatgagcaa--ttcaatgggagttaa |
249 |
Q |
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| T |
36530626 |
actattatttagaagcaaacaatagttaatcgtcgttgggatattttcatcaattcgaggtacctatgatgcctaaagagcaattttcaatgggagttaa |
36530527 |
T |
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| Q |
250 |
caccaaa |
256 |
Q |
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| T |
36530526 |
caccaaa |
36530520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 25637878 - 25637794
Alignment:
| Q |
43 |
gcaatttcttgatttggattaaggttgtttagctgctggtttatgcttgctttgtggtggcaatgaatggttttctagagttgtaa |
128 |
Q |
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| T |
25637878 |
gcaatttcttgatttgggtta-ggttgtttagttgctggtttatgtttgctttgcaatggcaatgaattgttttcaagagttgtaa |
25637794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 36774463 - 36774503
Alignment:
| Q |
150 |
taactattatttaaaagcaaataatagttaattgtcgttgg |
190 |
Q |
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| T |
36774463 |
taactattgtttaaaaggaaataatagttaatcgtcgttgg |
36774503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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