View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8909_low_5 (Length: 618)
Name: NF8909_low_5
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 159 - 593
Target Start/End: Original strand, 28665811 - 28666245
Alignment:
| Q |
159 |
ggatgcaacacttttttacactatttcttaccaaacaaacttcttaatttccctctttccaatctctcatgtaactttttagcacctggagtatccatct |
258 |
Q |
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| T |
28665811 |
ggatgcaacacttttttacactatttcttaccaaacaaacttcttaatttccctctttccaatctctcatgtaaccttttagcacctggagtatccatct |
28665910 |
T |
|
| Q |
259 |
cagtaagtttcttcaaatatccaatagcaccatatgagatcattagcttcttacatttcttacttgaagaaatcaatccaaggcatgtaactgcatannn |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665911 |
cagtaagtttcttcaaatatccaatagcaccatatgagatcattagcttcttacatttcttacttgaagaaatcaatccaaggcatgtaactgcatattt |
28666010 |
T |
|
| Q |
359 |
nnnngcattgttttgaggactaggatcaagtaactgaaccaaattaggcacacttttatcatccttcttagcttctcttctattttgtgacacagttaac |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28666011 |
ttttgcattgttttgaggactaggatcaagtaactgaaccaaattaggcacacttttatcatccttcttagtttctcttctattttgtgacacagttaac |
28666110 |
T |
|
| Q |
459 |
aagcttgctaatgcttgtgcagaaatttctctagcactgttttgtttagcctcaagcattttaacaaggagaggaatgcaaccggcttcgccgaccaatt |
558 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666111 |
aagcttgctaatgcttgtgcagaaatttctctagcactgttttgtttagcctcaagcattttaacaaggagaggaatgcaaccggcttcgccgaccaatt |
28666210 |
T |
|
| Q |
559 |
ttttcatttctgtcgagctgctaactcggcagatt |
593 |
Q |
| |
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| T |
28666211 |
ttttcatttctgtcgagctgctaactcggcagatt |
28666245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 28665661 - 28665786
Alignment:
| Q |
14 |
agcagagacagaaagagtaaacaaagtttaaatatttatatataatgtaacattgattacaatacatggattagcaagtttgtgcattccactttataca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28665661 |
agcagagacagaaagagtaaacaaagtttaaatattcatatataatgtaacattgattacaatacatggattagcaagtttgtgcattccactttataca |
28665760 |
T |
|
| Q |
114 |
ttcttagctattttgcatcatgatat |
139 |
Q |
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| T |
28665761 |
ttcttagctattttgcatcatgatat |
28665786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 191 - 517
Target Start/End: Original strand, 12483916 - 12484242
Alignment:
| Q |
191 |
aaacaaacttcttaatttccctctttccaatctctcatgtaactttttagcacctggagtatccatctcagtaagtttcttcaaatatccaatagcacca |
290 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||| | ||||||||||| |||||| | || || ||| |||| ||||||||||| || || || ||| |
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| T |
12483916 |
aaacaaacttctcaatttccctctttccaatctttcacgcaactttttagctcctggaatctctatgtcaataagcttcttcaaataccctattgctcca |
12484015 |
T |
|
| Q |
291 |
tatgagatcattagcttcttacatttcttacttgaagaaatcaatccaaggcatgtaactgcatannnnnnngcattgttttgaggactaggatcaagta |
390 |
Q |
| |
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||||| ||||| | | |||||||||||||| ||||||| |||||||||| |||||| || ||| ||||||| |||||||||||||| | |
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| T |
12484016 |
tatgatatcatcaaccgcttacatttcttacaagaagaaagtgatccaaggcaacaaactgcgtattttttcgcagtgttttgtggactaggatcaagca |
12484115 |
T |
|
| Q |
391 |
actgaaccaaattaggcacacttttatcatccttcttagcttctcttctattttgtgacacagttaacaagcttgctaatgcttgtgcagaaatttctct |
490 |
Q |
| |
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| ||||||||||| ||||| |||||||||||||| ||| | |||| | ||| || |||| | | | ||| || || | ||||||||| | || |||||| |
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| T |
12484116 |
attgaaccaaattcggcacgcttttatcatcctttttaacctctcgccgattctgagacaaaatcatcaaactggcaattgcttgtgctgcaagttctct |
12484215 |
T |
|
| Q |
491 |
agcactgttttgtttagcctcaagcat |
517 |
Q |
| |
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|||| ||||| ||||||||||||||| |
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|
| T |
12484216 |
agcagtgtttgctttagcctcaagcat |
12484242 |
T |
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