View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8909_low_54 (Length: 222)

Name: NF8909_low_54
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8909_low_54
NF8909_low_54
[»] scaffold0284 (1 HSPs)
scaffold0284 (17-208)||(2254-2445)
[»] chr4 (7 HSPs)
chr4 (5-210)||(6553013-6553219)
chr4 (5-210)||(6552613-6552819)
chr4 (5-210)||(312787-313003)
chr4 (140-207)||(38932846-38932914)
chr4 (46-112)||(24181727-24181793)
chr4 (142-204)||(48828123-48828185)
chr4 (83-135)||(6561023-6561075)
[»] chr8 (3 HSPs)
chr8 (30-210)||(41528440-41528620)
chr8 (17-210)||(36754454-36754647)
chr8 (54-112)||(43216917-43216975)
[»] scaffold0114 (1 HSPs)
scaffold0114 (5-210)||(35117-35323)
[»] chr1 (7 HSPs)
chr1 (5-210)||(45919624-45919830)
chr1 (5-210)||(49880255-49880463)
chr1 (134-203)||(40872549-40872618)
chr1 (46-126)||(16853665-16853745)
chr1 (54-135)||(31088746-31088829)
chr1 (166-207)||(9890556-9890597)
chr1 (169-201)||(51849590-51849622)
[»] chr2 (7 HSPs)
chr2 (17-210)||(31967255-31967448)
chr2 (142-207)||(23077824-23077889)
chr2 (137-209)||(9470617-9470689)
chr2 (142-210)||(41746338-41746406)
chr2 (94-133)||(36727631-36727670)
chr2 (80-120)||(36720129-36720169)
chr2 (46-130)||(45054025-45054109)
[»] chr5 (2 HSPs)
chr5 (19-210)||(9023444-9023635)
chr5 (169-205)||(27769810-27769846)
[»] scaffold0211 (1 HSPs)
scaffold0211 (5-210)||(19858-20064)
[»] chr3 (6 HSPs)
chr3 (20-187)||(50239968-50240138)
chr3 (136-210)||(7672541-7672615)
chr3 (149-215)||(43838652-43838718)
chr3 (169-210)||(30006165-30006206)
chr3 (45-112)||(14249223-14249290)
chr3 (46-112)||(6437626-6437692)
[»] chr6 (6 HSPs)
chr6 (134-207)||(6525049-6525122)
chr6 (144-210)||(21237365-21237431)
chr6 (170-201)||(12291667-12291698)
chr6 (46-125)||(18089942-18090021)
chr6 (46-127)||(26595897-26595978)
chr6 (47-135)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (46-112)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (83-135)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (46-133)||(32751-32837)
[»] chr7 (4 HSPs)
chr7 (135-197)||(5198098-5198160)
chr7 (142-206)||(30839724-30839788)
chr7 (79-133)||(2929478-2929532)
chr7 (46-112)||(6190585-6190651)
[»] scaffold0252 (1 HSPs)
scaffold0252 (142-207)||(17102-17166)


Alignment Details
Target: scaffold0284 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 2254 - 2445
Alignment:
Q  17 catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 116  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2254 catcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 2353  T
Q  117 acatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2354 acatttacttttgcatccagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatctattaaaattttaaattgtctc 2445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6553219 - 6553013
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  6553219 caatgagttggatcatcacattatgttaaggttaatcatacaattgacagcacaccatcatccaaaatcttagtctattaggtatatcgatcatctcact 6553120  T
Q  104 tatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6553119 tatatgtttcttaacatttacttttgcatctagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaatt 6553020  T
Q  204 gtctctg 210  Q
    |||||||    
T  6553019 gtctctg 6553013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6552819 - 6552613
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6552819 caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 6552720  T
Q  104 tatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  6552719 tatacgttttttaacatttacttttgcatccagggacagatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaagatttaaatt 6552620  T
Q  204 gtctctg 210  Q
    |||||||    
T  6552619 gtctctg 6552613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 313003 - 312787
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  313003 caatgagttggatcatcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 312904  T
Q  104 tatatgtttcttaacatttacttttgcatcca----------gggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaa 193  Q
    ||||||||||||||||||||||||||||||||          | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  312903 tatatgtttcttaacatttacttttgcatccacagacagatcgagacagatcgagacattggatacatgtgaggctaaaatagtccatcaatgtattaaa 312804  T
Q  194 attttaaattgtctctg 210  Q
    |||||||||||||||||    
T  312803 attttaaattgtctctg 312787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 38932914 - 38932846
Alignment:
Q  140 cagatctagacattggatgcatgtgaggctaaaatagtccctcaa-tgtattaaaattttaaattgtct 207  Q
    ||||| |||||||| ||||||| || || |||||||||| ||||| ||||| |||||||||||||||||    
T  38932914 cagatttagacatttgatgcatatggggttaaaatagtctctcaaatgtatcaaaattttaaattgtct 38932846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 24181727 - 24181793
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    ||||||| || ||||||| |||||| ||||  | |||| |||||| |||||||||||||||||||||    
T  24181727 attgacaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgttt 24181793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 48828185 - 48828123
Alignment:
Q  142 gatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattg 204  Q
    |||||||||||| |||  ||||| ||||||||||| ||||||||||||  ||||||| |||||    
T  48828185 gatctagacatttgatatatgtggggctaaaatagaccctcaatgtatcgaaattttcaattg 48828123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 6561075 - 6561023
Alignment:
Q  83 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 135  Q
    |||||||| | ||||||||||||||||||  ||||||| |||||||| |||||    
T  6561075 aggtatattggtcatctcacttatatgttgtttaacatctacttttgtatcca 6561023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 41528440 - 41528620
Alignment:
Q  30 taaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528440 taaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttg 41528539  T
Q  130 catccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  41528540 catccagggacatatctagacattggatacatgtgaggctaaaatagtacatcaatgtattaaaattttaaattgtctctg 41528620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 36754454 - 36754647
Alignment:
Q  17 catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 116  Q
    |||||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36754454 catcacattatgttaaggttaatcatactattgacagcagatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 36754553  T
Q  117 acatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  36754554 acatttacttttgcatccagggatagatctagacattggatacatgtgaggctaagatagtccatcaatgtattaaaattttaaattgtctctg 36754647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 43216917 - 43216975
Alignment:
Q  54 cacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    |||||||||| |||||||||||  | |||| |||||| |||||||||||||||||||||    
T  43216917 cacatcatcacccaaaatcttaaagcattatgtatattgatcatctcacttatatgttt 43216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 35323 - 35117
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  35323 caatgagttggatcatcactttatgttaaggttaatcatacaattgacagcacaacatcatccaaaatcttagtgtattaggtatatcgatcatctaact 35224  T
Q  104 tatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  35223 tatatgtttcttaacatttacttttgcatccagggacaaatctagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaatt 35124  T
Q  204 gtctctg 210  Q
    |||||||    
T  35123 gtctctg 35117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 45919624 - 45919830
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45919624 caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 45919723  T
Q  104 tatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||    
T  45919724 tatatatttcttaacatttacttttgcatccagggacggatctagacattggatacatgtgagactaaaatagtccaccaatgtattaaaattttaaatt 45919823  T
Q  204 gtctctg 210  Q
    |||||||    
T  45919824 gtctctg 45919830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 49880463 - 49880255
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcg--atcatctca 101  Q
    ||||||| |||| |||||||||||  ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||   |||||||||    
T  49880463 caatgagttggatcatcacattatgttaaggttaatcatacaattgacaacacatcatcaatcaaaatcttagtgtattaggtatatctttatcatctca 49880364  T
Q  102 cttatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaa 201  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||||  ||||||||| ||||||||||    
T  49880363 cttatatgtttcttaacatttacttttgcatccagggacggatctagacattggatacatgcgagactaaaatagtccaccaatgtatttaaattttaaa 49880264  T
Q  202 ttgtctctg 210  Q
    |||||||||    
T  49880263 ttgtctctg 49880255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 40872549 - 40872618
Alignment:
Q  134 cagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    |||||||| || |||||||| |||  |||||||||||||||||||||| ||||||| |||||||||||||    
T  40872549 cagggacaaatttagacatttgatatatgtgaggctaaaatagtcccttaatgtatcaaaattttaaatt 40872618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 16853745 - 16853665
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttactt 126  Q
    ||||||| |||||||||| |||||| ||||  | |||| |||||| ||||||||||||||||||||| | || ||||||||    
T  16853745 attgacaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatttactt 16853665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 31088746 - 31088829
Alignment:
Q  54 cacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact--tatatgtttcttaacatttacttttgcatcca 135  Q
    |||| ||||||||||||| |||  | ||||||||||| ||||||||||||  ||||||||||| ||||  |||| |||||||||    
T  31088746 cacaccatcatccaaaatattaaggcattaggtatattgatcatctcacttatatatgtttctcaacacctactcttgcatcca 31088829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 9890556 - 9890597
Alignment:
Q  166 ggctaaaatagtccctcaatgtattaaaattttaaattgtct 207  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  9890556 ggctaaaatggtctttcaatgtattaaaattttaaattgtct 9890597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 51849622 - 51849590
Alignment:
Q  169 taaaatagtccctcaatgtattaaaattttaaa 201  Q
    ||||||||||||| |||||||||||||||||||    
T  51849622 taaaatagtccctgaatgtattaaaattttaaa 51849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 31967255 - 31967448
Alignment:
Q  17 catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 116  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967255 catcacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctta 31967354  T
Q  117 acatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||| ||| |||| ||||| |||||||||    
T  31967355 acatttacttttgcatccagggacaaatctagacattggatacatgtgaggctaaagtagtccatcaatttataaaaaatttaagttgtctctg 31967448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 23077824 - 23077889
Alignment:
Q  142 gatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtct 207  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||||||| |||||||||| ||||||    
T  23077824 gatctagacatcggatacatgtggggctaaaatagttcctcaatgtatcaaaattttaagttgtct 23077889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 9470617 - 9470689
Alignment:
Q  137 ggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctct 209  Q
    |||| |||||||||||| ||| |||||| || |||||||||| || ||| ||| |||||||||||||||||||    
T  9470617 ggacggatctagacatttgatacatgtggggttaaaatagtcactaaatatatcaaaattttaaattgtctct 9470689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 41746338 - 41746406
Alignment:
Q  142 gatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    |||||||||||| |||  ||||| ||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  41746338 gatctagacatttgatatatgtggggctaaaatagacccttaatatatcaaaattttaaattgtctctg 41746406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 36727631 - 36727670
Alignment:
Q  94 tcatctcacttatatgtttcttaacatttacttttgcatc 133  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  36727631 tcatctcacatatatgtttcttaacatctacttttgcatc 36727670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 36720169 - 36720129
Alignment:
Q  80 attaggtatatcgatcatctcacttatatgtttcttaacat 120  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  36720169 attaggtatatggatcatctcacttatatgttgctcaacat 36720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 45054025 - 45054109
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgc 130  Q
    ||||||| |||||| |||| ||||||||||    || |||||||| ||  |||||||||||||||| || || ||||||||||||    
T  45054025 attgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatatgttgctcaatatttacttttgc 45054109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 9023635 - 9023444
Alignment:
Q  19 tcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaac 118  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9023635 tcacattatgttaaggttaatcatacaattgacaacacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttgtatgtttcttaac 9023536  T
Q  119 atttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  9023535 atttacttttgcatccagggacaaatatagacattggatacatgtgaggctaagatagtctatcaatgtattaaaattttaaattgtctctg 9023444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 27769810 - 27769846
Alignment:
Q  169 taaaatagtccctcaatgtattaaaattttaaattgt 205  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  27769810 taaaatagtccctcaatgtataaaaaatttaaattgt 27769846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 19858 - 20064
Alignment:
Q  5 caatgagatgga-catcacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 103  Q
    ||||||| |||| |||||||||||  || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19858 caatgagttggatcatcacattatgttatggttaataatacaattggcagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcact 19957  T
Q  104 tatatgtttcttaacatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaatt 203  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||    
T  19958 tatatgtttcttaacatttacttttgcattcagggacaaatctagacattggatacatgtgaggttaagatagtccatcaatgtattaaaattttaaatt 20057  T
Q  204 gtctctg 210  Q
    |||||||    
T  20058 gtctctg 20064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 50240138 - 50239968
Alignment:
Q  20 cacattatactaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttc---tta 116  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  50240138 cacattatgttaaggttaatcatacaattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctaatta 50240039  T
Q  117 acatttacttttgcatccagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgt 187  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  50240038 acatttacttttgcatcgagggacagatctagacattggctacatgtgaggctaaaatagtccatcaatgt 50239968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 7672615 - 7672541
Alignment:
Q  136 gggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    ||||| |||||||| ||| ||| |||||  || ||||||||| | ||||||||||||||||||||||||||||||    
T  7672615 gggacggatctagatatttgatacatgtatggttaaaatagttcatcaatgtattaaaattttaaattgtctctg 7672541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 43838718 - 43838652
Alignment:
Q  149 acattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctgcttct 215  Q
    ||||| ||| |||||| |||||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  43838718 acatttgatacatgtggggctaaaatagttcctcaatgtatcaaaattttacattgtctctgattct 43838652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 30006165 - 30006206
Alignment:
Q  169 taaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  30006165 taaaatagtcccacaatgtattaaaattttaaattatctctg 30006206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14249223 - 14249290
Alignment:
Q  45 aattgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    |||||| | |||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  14249223 aattgataccacatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 14249290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 6437692 - 6437626
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    ||||||| ||||||||||  ||||| ||||  | |||| |||||| |||||||||||||||||||||    
T  6437692 attgacaccacatcatcactcaaaaccttaaagcattatgtatattgatcatctcacttatatgttt 6437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 6525122 - 6525049
Alignment:
Q  134 cagggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtct 207  Q
    ||||| |||||||||||||| ||| |||||| | |||||||||||| ||||||||| |||||||||||||||||    
T  6525122 caggggcagatctagacatttgatacatgtgggactaaaatagtccatcaatgtatcaaaattttaaattgtct 6525049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 21237431 - 21237365
Alignment:
Q  144 tctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtctctg 210  Q
    ||||||||||  || |||||| || ||||||||||||  ||||||| ||||||||||||||||||||    
T  21237431 tctagacatttcatacatgtggggttaaaatagtcccataatgtatcaaaattttaaattgtctctg 21237365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 201
Target Start/End: Complemental strand, 12291698 - 12291667
Alignment:
Q  170 aaaatagtccctcaatgtattaaaattttaaa 201  Q
    ||||||||||||||||||||||||||||||||    
T  12291698 aaaatagtccctcaatgtattaaaattttaaa 12291667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 18089942 - 18090021
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttact 125  Q
    ||||||| |||||| ||| |||||| ||||  | ||||||||||| | |||||||| |||||||||||| ||||| ||||    
T  18089942 attgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtttctgaacatctact 18090021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 26595897 - 26595978
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttt 127  Q
    ||||||| ||||||||||||||||| ||||    |||||||  || | |||||| |||||||||||||| ||||| ||||||    
T  26595897 attgacatcacatcatcatccaaaaccttaagacattaggtgcattggtcatcttacttatatgtttctaaacatctacttt 26595978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 31737166 - 31737254
Alignment:
Q  47 ttgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 135  Q
    |||||| |||||| |||  | |||||||| ||||||||||||||  ||||| |||||| ||||||  | ||||| |||| |||||||||    
T  31737166 ttgacaccacatcttcacactaaatcttaatgtattaggtatatgaatcatatcacttgtatgttgttcaacatctactcttgcatcca 31737254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 11711 - 11645
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    ||||||| |||||||||| |||||| ||||  |||||| |||||| |||||||||||||||||||||    
T  11711 attgacaccacatcatcacccaaaaccttaaagtattatgtatattgatcatctcacttatatgttt 11645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 29157 - 29209
Alignment:
Q  83 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 135  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||||||||||||    
T  29157 aggtatattgatcatctcacttatatgttgtttaacatctacttttgcatcca 29209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 32837 - 32751
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 133  Q
    ||||||| |||||||||||| ||||| |||  | || |||||||||  ||||||||||||||||||||||||||| | || |||||||    
T  32837 attgacaccacatcatcatc-aaaattttaacgcatcaggtatatcagtcatctcacttatatgtttcttaacatatgctcttgcatc 32751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 5198160 - 5198098
Alignment:
Q  135 agggacagatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattt 197  Q
    |||| |||||||||||||| ||||||| ||  |||||||||||| |||||||||| |||||||    
T  5198160 aggggcagatctagacatttgatgcatatggagctaaaatagtctctcaatgtatcaaaattt 5198098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 30839724 - 30839788
Alignment:
Q  142 gatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtc 206  Q
    |||||||||||| ||| ||| || |||||||||||||||| ||||||| | |||||| |||||||    
T  30839724 gatctagacatttgatacatttggggctaaaatagtcccttaatgtatcagaatttttaattgtc 30839788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 2929532 - 2929478
Alignment:
Q  79 tattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 133  Q
    |||||||||| | | ||||||||| ||||||||||||||||| ||||||| ||||    
T  2929532 tattaggtatcttggtcatctcacatatatgtttcttaacatctacttttacatc 2929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 6190651 - 6190585
Alignment:
Q  46 attgacagcacatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 112  Q
    ||||||| |||||||||| |||||||||||  | |||| |||||| ||| ||| |||||||||||||    
T  6190651 attgacaccacatcatcacccaaaatcttaaagcattatgtatattgataatcccacttatatgttt 6190585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 17102 - 17166
Alignment:
Q  142 gatctagacattggatgcatgtgaggctaaaatagtccctcaatgtattaaaattttaaattgtct 207  Q
    |||||||||||| ||| |||||| ||| |||||||||  ||||||||| |||||||||||||||||    
T  17102 gatctagacatttgatacatgtggggc-aaaatagtctttcaatgtatcaaaattttaaattgtct 17166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University