View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8909_low_59 (Length: 212)

Name: NF8909_low_59
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8909_low_59
NF8909_low_59
[»] chr3 (19 HSPs)
chr3 (68-159)||(24357308-24357392)
chr3 (146-197)||(24357411-24357462)
chr3 (77-119)||(42886880-42886922)
chr3 (74-119)||(3985992-3986037)
chr3 (74-119)||(19115517-19115562)
chr3 (74-119)||(44064429-44064474)
chr3 (136-187)||(19115478-19115529)
chr3 (78-119)||(4759421-4759462)
chr3 (74-119)||(42571503-42571548)
chr3 (74-119)||(45460797-45460842)
chr3 (136-184)||(4759385-4759433)
chr3 (1-53)||(24357245-24357297)
chr3 (136-187)||(42886841-42886892)
chr3 (136-182)||(45460763-45460809)
chr3 (74-119)||(11337586-11337631)
chr3 (74-119)||(50038146-50038190)
chr3 (1-53)||(3986027-3986079)
chr3 (73-121)||(30680786-30680834)
chr3 (1-37)||(54918276-54918312)
[»] chr4 (20 HSPs)
chr4 (74-119)||(7905977-7906022)
chr4 (74-121)||(51733475-51733522)
chr4 (74-119)||(4505467-4505512)
chr4 (136-187)||(51733508-51733559)
chr4 (136-190)||(4505425-4505479)
chr4 (74-119)||(22220340-22220385)
chr4 (74-119)||(36558270-36558315)
chr4 (74-119)||(37624687-37624732)
chr4 (136-186)||(37624649-37624699)
chr4 (73-119)||(38510225-38510271)
chr4 (74-119)||(21864364-21864409)
chr4 (74-119)||(21920225-21920270)
chr4 (74-119)||(25231306-25231351)
chr4 (74-119)||(52915523-52915568)
chr4 (136-187)||(7906010-7906061)
chr4 (74-121)||(28308855-28308902)
chr4 (1-35)||(30261455-30261489)
chr4 (74-119)||(43337728-43337773)
chr4 (151-187)||(25231267-25231303)
chr4 (151-187)||(43337776-43337812)
[»] chr7 (29 HSPs)
chr7 (73-119)||(47187793-47187839)
chr7 (74-119)||(6747357-6747402)
chr7 (74-119)||(12977661-12977706)
chr7 (74-119)||(12983119-12983164)
chr7 (74-119)||(18292466-18292511)
chr7 (74-119)||(42286039-42286084)
chr7 (74-119)||(2297174-2297219)
chr7 (74-119)||(31883915-31883960)
chr7 (74-119)||(34274925-34274970)
chr7 (136-187)||(12983152-12983203)
chr7 (136-187)||(18292427-18292478)
chr7 (136-187)||(31883876-31883927)
chr7 (74-119)||(715838-715883)
chr7 (74-119)||(18270709-18270754)
chr7 (74-119)||(37502450-37502495)
chr7 (74-119)||(40339600-40339645)
chr7 (136-185)||(40927254-40927303)
chr7 (136-187)||(2297135-2297186)
chr7 (136-187)||(12977694-12977745)
chr7 (136-187)||(18270670-18270721)
chr7 (136-187)||(34274886-34274937)
chr7 (136-187)||(37502411-37502462)
chr7 (136-187)||(44567049-44567100)
chr7 (73-119)||(7900070-7900116)
chr7 (73-119)||(19303358-19303404)
chr7 (74-119)||(4268794-4268839)
chr7 (74-119)||(25441003-25441048)
chr7 (74-115)||(31929834-31929875)
chr7 (150-187)||(31929882-31929919)
[»] chr5 (12 HSPs)
chr5 (73-119)||(35765876-35765922)
chr5 (74-119)||(7317159-7317204)
chr5 (74-119)||(10344909-10344954)
chr5 (74-119)||(32158673-32158718)
chr5 (74-119)||(3024908-3024953)
chr5 (136-187)||(43584386-43584437)
chr5 (136-190)||(7317117-7317171)
chr5 (136-186)||(35765910-35765960)
chr5 (74-115)||(25362777-25362818)
chr5 (74-119)||(43584353-43584398)
chr5 (136-187)||(25362810-25362861)
chr5 (74-119)||(13974415-13974460)
[»] chr2 (16 HSPs)
chr2 (73-119)||(35799333-35799379)
chr2 (73-119)||(5717643-5717689)
chr2 (73-119)||(22620310-22620356)
chr2 (136-190)||(35799291-35799345)
chr2 (74-119)||(27986169-27986214)
chr2 (74-119)||(28072701-28072746)
chr2 (74-119)||(32022877-32022922)
chr2 (136-187)||(16463042-16463093)
chr2 (136-187)||(17695835-17695886)
chr2 (136-187)||(43427297-43427348)
chr2 (136-190)||(14286020-14286074)
chr2 (89-119)||(16463024-16463054)
chr2 (136-181)||(16792584-16792629)
chr2 (74-119)||(17695802-17695847)
chr2 (74-119)||(43427265-43427309)
chr2 (74-119)||(45423749-45423794)
[»] chr1 (26 HSPs)
chr1 (136-190)||(14373421-14373475)
chr1 (73-119)||(34032054-34032100)
chr1 (74-119)||(50249441-50249486)
chr1 (136-187)||(50249402-50249453)
chr1 (136-190)||(12591090-12591144)
chr1 (74-119)||(14373388-14373433)
chr1 (74-119)||(30293467-30293512)
chr1 (74-119)||(34047208-34047253)
chr1 (74-119)||(39125734-39125779)
chr1 (74-119)||(44257656-44257701)
chr1 (74-119)||(52023948-52023993)
chr1 (136-187)||(34032088-34032139)
chr1 (136-190)||(26352089-26352143)
chr1 (73-119)||(44557033-44557079)
chr1 (74-119)||(14593320-14593365)
chr1 (74-119)||(26352056-26352101)
chr1 (136-187)||(12484636-12484687)
chr1 (76-119)||(12591059-12591102)
chr1 (136-187)||(14593353-14593404)
chr1 (79-113)||(11799608-11799642)
chr1 (73-119)||(27721089-27721135)
chr1 (73-119)||(27721204-27721250)
chr1 (76-121)||(5672-5717)
chr1 (74-119)||(8894980-8895025)
chr1 (74-119)||(12484603-12484648)
chr1 (89-121)||(11449678-11449710)
[»] chr8 (13 HSPs)
chr8 (74-119)||(15160423-15160468)
chr8 (73-120)||(43724512-43724559)
chr8 (74-119)||(396191-396236)
chr8 (146-190)||(37559553-37559597)
chr8 (136-187)||(39765870-39765921)
chr8 (74-119)||(1511632-1511677)
chr8 (74-119)||(39765837-39765882)
chr8 (136-184)||(396224-396272)
chr8 (74-121)||(12339853-12339898)
chr8 (136-187)||(15160456-15160507)
chr8 (136-182)||(43724479-43724525)
chr8 (74-119)||(40399844-40399889)
chr8 (74-119)||(41679453-41679498)
[»] chr6 (12 HSPs)
chr6 (74-119)||(4850472-4850517)
chr6 (74-119)||(29400076-29400121)
chr6 (73-120)||(19689460-19689507)
chr6 (74-119)||(32429418-32429463)
chr6 (74-119)||(13503810-13503855)
chr6 (86-119)||(13597932-13597965)
chr6 (136-187)||(4850505-4850556)
chr6 (136-186)||(19689423-19689473)
chr6 (74-119)||(1502719-1502764)
chr6 (74-119)||(13011314-13011359)
chr6 (150-187)||(19689250-19689287)
chr6 (136-184)||(32429382-32429430)
[»] scaffold0332 (1 HSPs)
scaffold0332 (74-119)||(3787-3832)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-37)||(9877-9913)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 24357308 - 24357392
Alignment:
Q  68 gttacaaaatgcaatgattaaaagaaagagaattgttattttaccaaattattcnnnnnnnaaagaagtttaccaaactattcttattaact 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||| ||||||||||||||    
T  24357308 gttacaaaatgcaatgattaaaagaaagagaattgttattttaccaaatgatt-------aaaagaagtttaccaaattattcttattaact 24357392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 24357411 - 24357462
Alignment:
Q  146 tattcttattaactattggttaattttaaaaataatactttgaaattggtgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24357411 tattcttattaactattggttaattttaaaaataatactttgaaattggtgt 24357462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 42886922 - 42886880
Alignment:
Q  77 tgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42886922 tgcaatgattaaaagaaagagaattgttattttaccaaattat 42886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 3986037 - 3985992
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  3986037 aaatgcaatgattaaaagaaagagaatttttattttaccaaattat 3985992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 19115562 - 19115517
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19115562 aaatgcaatgattaaaagaaaaagaatggttattttaccaaattat 19115517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 44064429 - 44064474
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  44064429 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 44064474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 19115529 - 19115478
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  19115529 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 19115478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 4759462 - 4759421
Alignment:
Q  78 gcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  4759462 gcaatgattaaaagaaagcgaatggttattttaccaaattat 4759421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 42571503 - 42571548
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  42571503 aaatgcaatgattaaaagatagagaatggttattttatcaaattat 42571548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 45460842 - 45460797
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||    
T  45460842 aaatgcaaagattaaaagaaataaaattgttattttaccaaattat 45460797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 4759433 - 4759385
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatact 184  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||    
T  4759433 tttaccaaattatccttattaactattggttagttttaaaagtaatact 4759385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24357245 - 24357297
Alignment:
Q  1 gtttcaaaatgattatcgtttaaagtttttacacatactacgaaatgcaatga 53  Q
    |||||||||| | | |||||||||||||| ||||||||| |||||||||||||    
T  24357245 gtttcaaaataaatgtcgtttaaagttttcacacatactgcgaaatgcaatga 24357297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 42886892 - 42886841
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||    
T  42886892 tttaccaaattatccttattaactattgattagttttaaaagtaatactttg 42886841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 45460809 - 45460763
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataata 182  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||    
T  45460809 tttaccaaattatccttattaactattggttagttttaaaagtaata 45460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 11337586 - 11337631
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||| ||||||| |||| || |||||||||||||||    
T  11337586 aaatgcaatgattagaagaaagggaatagtaattttaccaaattat 11337631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 50038146 - 50038190
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||    
T  50038146 aaatgcaatgattaaaag-aagagaatgattattttaccaaattat 50038190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3986079 - 3986027
Alignment:
Q  1 gtttcaaaatgattatcgtttaaagtttttacacatactacgaaatgcaatga 53  Q
    |||||||||||| | |||||||| ||||||||||| | || ||||||||||||    
T  3986079 gtttcaaaatgaatgtcgtttaaggtttttacacacattaagaaatgcaatga 3986027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 30680786 - 30680834
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 121  Q
    |||||| | ||||||||||||| |||  |||||||||||||||||||||    
T  30680786 aaaatgtattgattaaaagaaaaagagatgttattttaccaaattattc 30680834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 54918312 - 54918276
Alignment:
Q  1 gtttcaaaatgattatcgtttaaagtttttacacata 37  Q
    |||||||||||| |||||||||| |||||||||||||    
T  54918312 gtttcaaaatgagtatcgtttaaggtttttacacata 54918276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 7905977 - 7906022
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7905977 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 7906022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 51733475 - 51733522
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 121  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51733475 aaatgcaatgattaaaagaaagagaatggttattttaccaaattattc 51733522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 4505512 - 4505467
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4505512 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 4505467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 51733508 - 51733559
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  51733508 tttaccaaattattcttattaactattggttagttttaaaagtaatactttg 51733559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 4505479 - 4505425
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||    
T  4505479 tttaccaaattatccttattaactattggttagttttaaaactaatactttgaaa 4505425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 22220340 - 22220385
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||    
T  22220340 aaatgcaatgattaaaagaatgagaatggttattttaccaaattat 22220385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 36558270 - 36558315
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||    
T  36558270 aaatgcaatgattaaaagaaagataatttttattttaccaaattat 36558315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 37624732 - 37624687
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  37624732 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 37624687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 37624699 - 37624649
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatacttt 186  Q
    ||||||||| ||| |||||||| ||||||||| ||||||||||||||||||    
T  37624699 tttaccaaattatccttattaattattggttagttttaaaaataatacttt 37624649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 38510225 - 38510271
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||    
T  38510225 aaaatgcaatgattaaaagaaaaagaaaggttattttaccaaattat 38510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 21864364 - 21864409
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  21864364 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 21864409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 21920225 - 21920270
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  21920225 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 21920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 25231351 - 25231306
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||    
T  25231351 aaatgcaatgattaaaagaaagagaatgattattttatcaaattat 25231306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 52915523 - 52915568
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  52915523 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 52915568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 7906010 - 7906061
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  7906010 tttaccaaattatccttattaactatttgttagttttaaaagtaatactttg 7906061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 28308902 - 28308855
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 121  Q
    ||||||||||||||||||||||| || | |||||||| ||||||||||    
T  28308902 aaatgcaatgattaaaagaaagataaatattattttatcaaattattc 28308855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30261489 - 30261455
Alignment:
Q  1 gtttcaaaatgattatcgtttaaagtttttacaca 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  30261489 gtttcaaaatgaatatcgtttaaagtttttacaca 30261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 43337728 - 43337773
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||| ||||||||    
T  43337728 aaatacaatgattaaaagaaagagaatgattattttatcaaattat 43337773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 25231303 - 25231267
Alignment:
Q  151 ttattaactattggttaattttaaaaataatactttg 187  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  25231303 ttattaactattggttaagtttaaaagtaatactttg 25231267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 43337776 - 43337812
Alignment:
Q  151 ttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  43337776 ttattaactattggttagttttaaaagtaatactttg 43337812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 47187839 - 47187793
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  47187839 aaaatgcattgattaaaagaaagagaattgttattttaccaaattat 47187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 6747402 - 6747357
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  6747402 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 6747357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 12977661 - 12977706
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12977661 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 12977706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 12983119 - 12983164
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  12983119 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 12983164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 18292511 - 18292466
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  18292511 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 18292466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 42286084 - 42286039
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  42286084 aaatgcaatgattaaaataaagagaattgttattttaccaaattat 42286039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 2297219 - 2297174
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  2297219 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 2297174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 31883960 - 31883915
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  31883960 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 31883915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 34274970 - 34274925
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  34274970 aaatacaatgattaaaagaaagagaatggttattttaccaaattat 34274925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 12983152 - 12983203
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  12983152 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 12983203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 18292478 - 18292427
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  18292478 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 18292427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 31883927 - 31883876
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  31883927 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 31883876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 715838 - 715883
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||    
T  715838 aaatgcaatgattaaaagaaagaaaatcattattttaccaaattat 715883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 18270754 - 18270709
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||    
T  18270754 aaatgcaatgattaaaagaaatagaatgattattttaccaaattat 18270709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 37502495 - 37502450
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  37502495 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 37502450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 40339645 - 40339600
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||    
T  40339645 aaatgcattaattaaaagaaagagaaatgttattttaccaaattat 40339600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 40927303 - 40927254
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactt 185  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  40927303 tttaccaaattatccttattaactattggttagttttaaaagtaatactt 40927254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 2297186 - 2297135
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| ||||    
T  2297186 tttaccaaattatctttattaactattggttagttttaaaaataatattttg 2297135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 12977694 - 12977745
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  12977694 tttaccaaattatccttattaactattagttagttttaaaagtaatactttg 12977745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 18270721 - 18270670
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| ||||||||||    
T  18270721 tttaccaaattatccttattaactattgattagttttaaaagtaatactttg 18270670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 34274937 - 34274886
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| |||  ||||||||||||||||| |||||||| ||||||||||    
T  34274937 tttaccaaattatctttattaactattggttagttttaaaagtaatactttg 34274886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 37502462 - 37502411
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| ||||    
T  37502462 tttaccaaattatccttattaactattggttagttttaaaagtaatattttg 37502411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 44567049 - 44567100
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    |||| |||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  44567049 tttatcaaattatccttattaactattggttagttttaaaagtaatactttg 44567100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 7900116 - 7900070
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  7900116 aaaatacaatgattaaatgaatgagaatagttattttaccaaattat 7900070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 19303358 - 19303404
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||| | |||||||||||||||| ||||||||||| |||||||    
T  19303358 aaaatgcattaattaaaagaaagagaaatgttattttactaaattat 19303404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 4268839 - 4268794
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  4268839 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 4268794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 25441048 - 25441003
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||| |||||||||||||||||||||  ||||||||| |||||||    
T  25441048 aaatgtaatgattaaaagaaagagaatgattattttactaaattat 25441003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 31929834 - 31929875
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaa 115  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  31929834 aaatgcaatgattaacagaaagagaatgtttattttaccaaa 31929875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 31929882 - 31929919
Alignment:
Q  150 cttattaactattggttaattttaaaaataatactttg 187  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  31929882 cttattaactattggttagttttaaaagtaatactttg 31929919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 35765876 - 35765922
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35765876 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 35765922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 7317204 - 7317159
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  7317204 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 7317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10344909 - 10344954
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10344909 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 10344954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 32158718 - 32158673
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32158718 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 32158673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 3024908 - 3024953
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||    
T  3024908 aaatgcaacgattaaaagaaagagaatggttattttaccaaattat 3024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 43584386 - 43584437
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||    
T  43584386 tttaccaaattatccttattaactattggttaattttaaaagtaatattttg 43584437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 7317171 - 7317117
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||||||||||| ||| |||||||| |||||||||||||    
T  7317171 tttaccaaattatccttattaactattgattagttttaaaagtaatactttgaaa 7317117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 35765910 - 35765960
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatacttt 186  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||    
T  35765910 tttaccaaattatccttattaactattggttagttttaaaagtaatacttt 35765960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 25362777 - 25362818
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaa 115  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  25362777 aaatgcaatgattaaaagaaagagaatggttgttttaccaaa 25362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 43584353 - 43584398
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  43584353 aaatacaatgattaaaagaaagagaatgattattttaccaaattat 43584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 25362810 - 25362861
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||||| || |||||||| ||||||||||    
T  25362810 tttaccaaaatatccttattaactattggctagttttaaaagtaatactttg 25362861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 13974460 - 13974415
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  13974460 aaatgcattaattaaaagaaagagaggtgttattttaccaaattat 13974415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 35799379 - 35799333
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35799379 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 35799333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 5717689 - 5717643
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  5717689 aaaatgcaatgattaaaagaaagagaatgattattttaccaaattat 5717643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 22620310 - 22620356
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||    
T  22620310 aaaatgcaatgattaaaagaaagagaatggttattttactaaattat 22620356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 35799345 - 35799291
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||    
T  35799345 tttaccaaattatccttattaactattggttagttttaaaagtaatactttgaaa 35799291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 27986214 - 27986169
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  27986214 aaatgcaattattaaaataaagagaatggttattttaccaaattat 27986169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 28072746 - 28072701
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  28072746 aaatgcaattattaaaataaagagaatggttattttaccaaattat 28072701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 32022877 - 32022922
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||    
T  32022877 aaatgtaatgattaaaagaaagagaatgattattttaccaaattat 32022922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 16463042 - 16463093
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||| |||||||||||||| |||||||| ||||||||||    
T  16463042 tttaccaaattatccttgttaactattggttagttttaaaagtaatactttg 16463093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 17695835 - 17695886
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| |||  ||||||||||||||||| |||||||| ||||||||||    
T  17695835 tttaccaaattatctttattaactattggttagttttaaaagtaatactttg 17695886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 43427297 - 43427348
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||| ||||| |||| |||||||||||||||||||    
T  43427297 tttaccaaattatccttattagctattagttagttttaaaaataatactttg 43427348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 14286074 - 14286020
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    |||| |||| ||| |||||||||||||||||| |||||||| | |||||||||||    
T  14286074 tttatcaaattatccttattaactattggttagttttaaaagttatactttgaaa 14286020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 16463024 - 16463054
Alignment:
Q  89 aagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||||||    
T  16463024 aagaaagagaattgttattttaccaaattat 16463054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 16792629 - 16792584
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataat 181  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||    
T  16792629 tttaccaaattatccttattaactattggttagttttaaaagtaat 16792584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 17695802 - 17695847
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| ||||||| |||| |||||| ||||||||||||||||||    
T  17695802 aaatgcagtgattaagagaatgagaatggttattttaccaaattat 17695847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 43427265 - 43427309
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  43427265 aaatgcaat-attaaaataaagagaatggttattttaccaaattat 43427309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 45423794 - 45423749
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||| ||||||||||| ||| |||||| |||||||||||||||||    
T  45423794 aaatgaaatgattaaaataaatagaattattattttaccaaattat 45423749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 14373421 - 14373475
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||    
T  14373421 tttaccaaattatccttattaactattggttagttttaaaaataatactttgaaa 14373475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 34032054 - 34032100
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  34032054 aaaatgcaatgattaaaagaaagagaatggttattttaccaaattat 34032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 50249486 - 50249441
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  50249486 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 50249441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 50249453 - 50249402
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  50249453 tttaccaaattatccttattaactattggttaattttaaaagtaatactttg 50249402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 12591090 - 12591144
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||| |||||||    
T  12591090 tttaccaaattatccttattaactattggttagttttaaaaataataatttgaaa 12591144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 14373388 - 14373433
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14373388 aaatgcaatgattaaaagaaaaagaatggttattttaccaaattat 14373433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 30293512 - 30293467
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  30293512 aaatgcaatgattaaaagaaagataatggttattttaccaaattat 30293467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 34047208 - 34047253
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  34047208 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 34047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 39125779 - 39125734
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  39125779 aaatgcaatgattaaaagaaagagaattgttatttttctaaattat 39125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 44257656 - 44257701
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  44257656 aaatgcaatgattaaaagaaagagaataattattttaccaaattat 44257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 52023948 - 52023993
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  52023948 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 52023993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 34032088 - 34032139
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  34032088 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 34032139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 26352089 - 26352143
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| |||||||||||||    
T  26352089 tttaccaaattatccttattgactattggttagttttaaaagtaatactttgaaa 26352143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 44557033 - 44557079
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||| | |||||||||||||||| |||||||||||||||||||    
T  44557033 aaaatgcattaattaaaagaaagagaaatgttattttaccaaattat 44557079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 14593320 - 14593365
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  14593320 aaatgcaatgattaaaaaaaagataatggttattttaccaaattat 14593365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 26352056 - 26352101
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||    
T  26352056 aaatgcaattattaaaagaaagagaatgtttattttaccaaattat 26352101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 12484636 - 12484687
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||| ||||||||||| |||||||| ||||||||||    
T  12484636 tttaccaaattatccttattgactattggttagttttaaaagtaatactttg 12484687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 12591059 - 12591102
Alignment:
Q  76 atgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  12591059 atgcaatgattaaaagaaagataatgattattttaccaaattat 12591102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 14593353 - 14593404
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  14593353 tttaccaaattatccttattaactatttgttagttttaaaagtaatactttg 14593404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 11799642 - 11799608
Alignment:
Q  79 caatgattaaaagaaagagaattgttattttacca 113  Q
    ||||| |||||||||||||||||||||||||||||    
T  11799642 caatgtttaaaagaaagagaattgttattttacca 11799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 27721135 - 27721089
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||||||    
T  27721135 aaaatgcaatgattaaaagaaagtgaatgattattttatcaaattat 27721089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 27721250 - 27721204
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||| |||||||||||||||||  |||||||| ||||||||    
T  27721250 aaaatgcaataattaaaagaaagagaatgattattttatcaaattat 27721204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 5672 - 5717
Alignment:
Q  76 atgcaatgattaaaagaaagagaattgttattttaccaaattattc 121  Q
    |||||||||||| || ||||||||| || |||||||||||||||||    
T  5672 atgcaatgattagaataaagagaatagtaattttaccaaattattc 5717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 8894980 - 8895025
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  8894980 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 8895025  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 12484603 - 12484648
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||||    
T  12484603 aaatacaaagattaaaagaaagataattgtcattttaccaaattat 12484648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 11449678 - 11449710
Alignment:
Q  89 aagaaagagaattgttattttaccaaattattc 121  Q
    |||||||| ||||||||||||||||||||||||    
T  11449678 aagaaagaaaattgttattttaccaaattattc 11449710  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 15160423 - 15160468
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  15160423 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 15160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 43724559 - 43724512
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattatt 120  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  43724559 aaaatgcaatgattaaaagaaagagaatgattattttaccaaattatt 43724512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 396191 - 396236
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  396191 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 37559553 - 37559597
Alignment:
Q  146 tattcttattaactattggttaattttaaaaataatactttgaaa 190  Q
    |||||||||||||||||||||| |||||||| |||||||||||||    
T  37559553 tattcttattaactattggttagttttaaaagtaatactttgaaa 37559597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 39765870 - 39765921
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||||||||    
T  39765870 tttaccaaattatccttattaactattggttagttttaaaagtaatactttg 39765921  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 1511677 - 1511632
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||    
T  1511677 aaatgcaatgattataagaaagagaattgtcattttactaaattat 1511632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 39765837 - 39765882
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||    
T  39765837 aaatacaatgattaaaagaaagagaatgcttattttaccaaattat 39765882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 396224 - 396272
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatact 184  Q
    ||||||||| ||| |||||||||||||||||| |||||||| |||||||    
T  396224 tttaccaaattatccttattaactattggttagttttaaaagtaatact 396272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 12339898 - 12339853
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattattc 121  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||    
T  12339898 aaatgcaatgattaaaaga--gagaattgttattttacaaaattattc 12339853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 15160456 - 15160507
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| ||||    
T  15160456 tttaccaaattatccttattaactattggttagttttaaaagtaatattttg 15160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 43724525 - 43724479
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataata 182  Q
    ||||||||| |||| ||||||||||||||||| |||||||| |||||    
T  43724525 tttaccaaattatttttattaactattggttagttttaaaagtaata 43724479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 40399844 - 40399889
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  40399844 aaatgcattaattaaaagaaagagatatgttattttaccaaattat 40399889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 41679498 - 41679453
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  41679498 aaatgcattaattaaaagaaagagaggtgttattttaccaaattat 41679453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 4850472 - 4850517
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  4850472 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 4850517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 29400121 - 29400076
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29400121 aaatgcaatgattaaaagaaagagaatggttattttaccaaattat 29400076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 19689507 - 19689460
Alignment:
Q  73 aaaatgcaatgattaaaagaaagagaattgttattttaccaaattatt 120  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  19689507 aaaatgcaatgattaaaagaaagataatggttattttaccaaattatt 19689460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 32429463 - 32429418
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    |||||||||||||||||||||||||||  |||||||||||||||||    
T  32429463 aaatgcaatgattaaaagaaagagaatgattattttaccaaattat 32429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 13503810 - 13503855
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||    
T  13503810 aaatgcattaattaaaagaaagagaaatgttattttaccaaattat 13503855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 13597932 - 13597965
Alignment:
Q  86 taaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||||||||||||||    
T  13597932 taaaagaaagagaattgttattttaccaaattat 13597965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 4850505 - 4850556
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatactttg 187  Q
    ||||||||| ||| |||||||||||||||||| |||||||| ||||| ||||    
T  4850505 tttaccaaattatccttattaactattggttagttttaaaagtaatattttg 4850556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 19689473 - 19689423
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatacttt 186  Q
    ||||||||| |||| ||||||||||||| ||| |||||||| |||||||||    
T  19689473 tttaccaaattattattattaactattgtttagttttaaaagtaatacttt 19689423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 1502719 - 1502764
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| ||||||||||||| |||  |||||||||||||||||||    
T  1502719 aaatgcattgattaaaagaaatagagatgttattttaccaaattat 1502764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 13011314 - 13011359
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||    
T  13011314 aaatgcattaattaaaagaaagagagatgttattttaccaaattat 13011359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 19689287 - 19689250
Alignment:
Q  150 cttattaactattggttaattttaaaaataatactttg 187  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  19689287 cttattaactattggttagttttaaaagtaatactttg 19689250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 32429430 - 32429382
Alignment:
Q  136 tttaccaaactattcttattaactattggttaattttaaaaataatact 184  Q
    ||||||||| |||  ||||||||||||||||| |||||||| |||||||    
T  32429430 tttaccaaattatctttattaactattggttagttttaaaagtaatact 32429382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 3787 - 3832
Alignment:
Q  74 aaatgcaatgattaaaagaaagagaattgttattttaccaaattat 119  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||    
T  3787 aaatgcaatgattaaaagaaagaaaatgattattttaccaaattat 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9877 - 9913
Alignment:
Q  1 gtttcaaaatgattatcgtttaaagtttttacacata 37  Q
    |||||||||||| | ||||||||||||||||||||||    
T  9877 gtttcaaaatgaatgtcgtttaaagtttttacacata 9913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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