View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8909_low_9 (Length: 535)
Name: NF8909_low_9
Description: NF8909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8909_low_9 |
 | |
|
| [»] scaffold0214 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 21 - 520
Target Start/End: Original strand, 7588574 - 7589073
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7588574 |
atctcttcctgaaacagaatatgattgtattcttgttggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
7588673 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7588674 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgccaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
7588773 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7588774 |
gatggtgttatgattagaagtgttccaagagtctcttaccagggtctcataatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggccct |
7588873 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgcc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7588874 |
ctagctaaagggagaccaccaaatcggagaagcaaaggattgtgatcagagtggagcctacaaagtacttccacaaaagcttcagggaaggacatgcgcc |
7588973 |
T |
|
| Q |
421 |
aatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgttgtagtgatgtc |
520 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7588974 |
aatcaatattagctaggcctcggtcgagctttttggaaagaattctcatgccattattgttacggtgccaagtataatgaccacctgttgtagtgatgtc |
7589073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 403
Target Start/End: Original strand, 46785672 - 46785802
Alignment:
| Q |
273 |
tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt |
372 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||| | || || | ||| ||||||||||| |||||||| |||||||| || ||||||| |
|
|
| T |
46785672 |
tctttgtggtcaatccaagctgcttcaaagcggaaaggtctagggccccttgcaagaggaagaccaccaaagcggagaaggagaggattatggtcagagt |
46785771 |
T |
|
| Q |
373 |
gtagcctacaaagtacttccactaaagcttc |
403 |
Q |
| |
|
|| |||||||| |||||||| |||||||| |
|
|
| T |
46785772 |
gtgttctacaaaggacttccacaaaagcttc |
46785802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 46785429 - 46785514
Alignment:
| Q |
30 |
tgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttg |
115 |
Q |
| |
|
||||| || ||||||| |||||||| || |||||||||||||| |||| ||||| | |||||| ||||||||||| ||| |||| |
|
|
| T |
46785429 |
tgaaagaggatatgatgatattcttgttgaagctctttttcaaggagagaatgtctgagagagtcaactctttcaagataaatttg |
46785514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 520
Target Start/End: Original strand, 26709655 - 26710154
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
26709655 |
atctcttcctgaaccagaatatgattgtattcttgttgaagctgcttttcaagaagagtgtgtcttagagagtccactctttcaagataattttggacac |
26709754 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
| ||||| || ||||||||||| ||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26709755 |
ctttgagcctgctttccacatgtttctttcttttaaaaatattgccaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
26709854 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||||||||| |||||| |||||| ||||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
26709855 |
catggtgttgtgattagaggagctccaagagttccttaccaggttctcataatctttatggtcaatccaagcagcttcaaaacgaaaaggtctaggccct |
26709954 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgcc |
420 |
Q |
| |
|
|| ||||||||||| || |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||| || ||||||| ||| |||||||||| |
|
|
| T |
26709955 |
cttgctaaagggaggcccccaatacggagaaggggaggattgtgatcagagtggagcctacaaagcacttccacgaaggcttcggtgaatgacatgcgcc |
26710054 |
T |
|
| Q |
421 |
aatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgttgtagtgatgtc |
520 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
|
|
| T |
26710055 |
agtcaatattagctagacctcggtcgagctttttggaaagaattctaatgccattattgttacgatgccatgtataacggcctcctgttgtagtgatgtc |
26710154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 14758867 - 14758751
Alignment:
| Q |
266 |
ctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtga |
365 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||||| |||||||| | |||| |||| | ||||||||| || || || |||||||| |||||||| || |
|
|
| T |
14758867 |
ctcataatccttatggtcgatccaagctgcttcaaatcgaaaagggcgaggccctctggataaagggagccctccgaaacggagaagaagaggattatgg |
14758768 |
T |
|
| Q |
366 |
tcagagtgtagcctaca |
382 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
14758767 |
tcagagtggagcctaca |
14758751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 26972396 - 26972296
Alignment:
| Q |
282 |
tcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctac |
381 |
Q |
| |
|
||||||||||| |||||||| |||||||| | ||| |||||| ||||||| | || || || ||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
26972396 |
tcgatccaagctgcttcaaaacgaaaagggcgaggtcctctagataaagggggccctccgaaatggagaagaagaggattatggtcagagtggagcctac |
26972297 |
T |
|
| Q |
382 |
a |
382 |
Q |
| |
|
| |
|
|
| T |
26972296 |
a |
26972296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 7e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 21 - 510
Target Start/End: Original strand, 16770909 - 16771398
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| || || || |||||||| |||||||| ||||| | ||| ||||||| ||||||||||||||||| | |
|
|
| T |
16770909 |
atctcttcttgaaaaagaatatgattatattcatgttgaagttctttttctagaagagtttgtctaacagaatccactcgttcaaggtaattttggatgc |
16771008 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
| || || || || ||||||||||| |||||| | || |||||| |||||||||||| |||||| |||| || || ||||||||| || | | ||| || |
|
|
| T |
16771009 |
ctttaagcctactctccacatgcttttttcttttaaaaatattgccaaagacttcattattaaaagtaatagaattttctttgacaatacttaaagcttt |
16771108 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
||| ||||| |||||||||| |||||||| | |||||||| | |||||| |||||||||||| ||||| |||||||||||||| || |||||||| || |
|
|
| T |
16771109 |
gatagtgttatgattagaagatttccaagaatttcttaccaagttctcataatctttgtggtcaatccaggcagcttcaaagcggaacggtctagggcct |
16771208 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgcc |
420 |
Q |
| |
|
||||||| ||| || |||||||| |||||||| |||||||| |||||||||| | |||||||| || ||||| || ||||| ||||| || ||||||| |
|
|
| T |
16771209 |
ctagctagaggaaggccaccaaagcggagaagaagaggattatgatcagagtacaatctacaaagcacctccacaaaggcttccgggaaagaaatgcgcc |
16771308 |
T |
|
| Q |
421 |
aatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgttg |
510 |
Q |
| |
|
|||| | ||||| || |||| || || ||||||||||||||||| || ||||||| || || || ||||| |||||||||| |||| |
|
|
| T |
16771309 |
aatcaacattagaaagacctctatcaagttttttggaaagaattctaataccattatgattgcgatggcaagtgaaacgaccaccagttg |
16771398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 23208835 - 23208986
Alignment:
| Q |
42 |
tgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttctttccacat |
141 |
Q |
| |
|
||||||||||| || || | || |||||||| |||||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| |||| |||| |
|
|
| T |
23208835 |
tgattgtattcctgttgcaattccttttcaaggagagtgtgtcgatatgagtcaactctttctaggtagttttgaacacccttgagtctattttctacat |
23208934 |
T |
|
| Q |
142 |
gcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatgga |
193 |
Q |
| |
|
| ||||| ||| |||| || ||| |||| |||||||| |||||||| ||||| |
|
|
| T |
23208935 |
gtttcttccttttgaaaatgttgccaaatacttcatgattaaaaatgatgga |
23208986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 23209065 - 23209154
Alignment:
| Q |
272 |
atctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggatt |
361 |
Q |
| |
|
||||||||| || |||||||| || |||||||| ||||| |||||| ||| |||||||||||| |||||||| ||||| || |||||||| |
|
|
| T |
23209065 |
atctttgtgatctatccaagctgcctcaaagcggaaaggcctaggccctcgagctaaagggagtccaccaaagcggaggaggagaggatt |
23209154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 454
Target Start/End: Complemental strand, 27152775 - 27152600
Alignment:
| Q |
279 |
tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc |
378 |
Q |
| |
|
||||| ||||||| ||||||||| || ||||| | |||| |||| ||||||||||| ||| |||| |||| || | | ||||||||||||| || || | |
|
|
| T |
27152775 |
tggtctatccaagaagcttcaaaacggaaagggcgaggccctctggctaaagggaggccaacaaaatggaggaggatatgattgtgatcagaatgaagtc |
27152676 |
T |
|
| Q |
379 |
tacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagcttttt |
454 |
Q |
| |
|
|||| || || ||||| |||||||| ||||||| | ||||||||| | ||| || ||||| | ||||||||||| |
|
|
| T |
27152675 |
tacagagaacctccacaaaagcttcaaggaaggaaaggcgccaatcaacatttgcaaggcccctatcgagcttttt |
27152600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 36 - 466
Target Start/End: Original strand, 3660575 - 3661005
Alignment:
| Q |
36 |
agaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttcttt |
135 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| | |||||||||||| | ||| |||||||||||||| || ||||| || || || || || | | |
|
|
| T |
3660575 |
agaatgtgattgtattcttgttgaagttctttttctaaaagagtgtgtctaagagaatccactctttcaagatagttttgaacccctttcagcctgttct |
3660674 |
T |
|
| Q |
136 |
ccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcattgatggtgttgtgatt |
235 |
Q |
| |
|
||||||| | |||||| | || |||||| |||||| ||||||||||||||| || || |||||||||||| |||| | ||| ||||| | || || |
|
|
| T |
3660675 |
ccacatgtctttttcttttaaaaatattgccaaagatttcatggttaaaaatgatagaattgtctttgacaatatttaaagctgaaatggtatcatggtt |
3660774 |
T |
|
| Q |
236 |
agaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggaga |
335 |
Q |
| |
|
| || |||||||||||||||||||||| |||||| |||||||| || |||||||| |||||||||||||| ||||| || ||||| | | ||||| |
|
|
| T |
3660775 |
ggcagagttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggagg |
3660874 |
T |
|
| Q |
336 |
ccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagcta |
435 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| |||||| |||||||||||| | ||| || | |
|
|
| T |
3660875 |
ccaccaaaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacatttgcca |
3660974 |
T |
|
| Q |
436 |
ggcctcggtcgagctttttggaaagaattct |
466 |
Q |
| |
|
|| || || || ||||||||||||||||| |
|
|
| T |
3660975 |
taccgcgatcaagttttttggaaagaattct |
3661005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 24730584 - 24730236
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||||||| |||||||| ||| |||||||| ||||| | | |
|
|
| T |
24730584 |
atctcttcttgaaaaaggatatgattatattcttgttgaagctctttttctaagagagtgtgtcttagagagtccattctctcaaggtagttttgaatgc |
24730485 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
| || | || || |||||| ||||||||||| | || |||||| ||||||||||||| |||||||| || || || ||||| ||| |||| | ||| | |
|
|
| T |
24730484 |
cttttaacctactctccacacgcttctttcttttaaaaatattgccaaagacttcatgattaaaaatgatagaattttctttaacaatatttaaagcggt |
24730385 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
|||||| || || || |||| ||||||||| | |||||||| | ||| | ||| || ||||| ||||| ||||| |||||||| |||||||| || || |
|
|
| T |
24730384 |
gatggtcttatggttggaagagttccaagaatttcttaccaagttcttgtaatccttatggtcaatccaggcagcctcaaagcggaaaggtcttggtcct |
24730285 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcag |
369 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
24730284 |
ctagctaagaggagaccaccaaaacggagaagaaggggattatgatcag |
24730236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 273 - 508
Target Start/End: Original strand, 17719555 - 17719790
Alignment:
| Q |
273 |
tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt |
372 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||| ||||||| | |||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
17719555 |
tctttgtggtctatccaggcagcttcaaatatgaaaggcctaggccctctagcaagagggaggccgccaaaacggagaaggagaggattatggtcagagt |
17719654 |
T |
|
| Q |
373 |
gtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgcc |
472 |
Q |
| |
|
||| |||||||| ||||| || |||||||| |||||||| ||| |||| || | |||||||| |||| ||| ||||| || |||||||| | || || |
|
|
| T |
17719655 |
gtaatctacaaagaacttcaacgaaagcttctgggaaggatatgtgccagtccacattagctatccctctgtcaagcttcttagaaagaatgcggatacc |
17719754 |
T |
|
| Q |
473 |
attattgttacggtgccaagtataacgaccacctgt |
508 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
17719755 |
attatgattacgatgccaagtaaaacgaccacctgt |
17719790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 273 - 508
Target Start/End: Original strand, 19020784 - 19021019
Alignment:
| Q |
273 |
tctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagt |
372 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||| ||||||| | |||||| || ||||| |||||||| |||||||| || ||||||| |
|
|
| T |
19020784 |
tctttgtggtctatccaggcagcttcaaatatgaaaggcctaggccctctagcaagagggaggccgccaaaacggagaaggagaggattatggtcagagt |
19020883 |
T |
|
| Q |
373 |
gtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgcc |
472 |
Q |
| |
|
||| |||||||| ||||| || |||||||| |||||||| ||| |||| || | |||||||| |||| ||| ||||| || |||||||| | || || |
|
|
| T |
19020884 |
gtaatctacaaagaacttcaacgaaagcttctgggaaggatatgtgccagtccacattagctatccctctgtcaagcttcttagaaagaatgcggatacc |
19020983 |
T |
|
| Q |
473 |
attattgttacggtgccaagtataacgaccacctgt |
508 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
19020984 |
attatgattacgatgccaagtaaaacgaccacctgt |
19021019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 36 - 262
Target Start/End: Original strand, 55025762 - 55025988
Alignment:
| Q |
36 |
agaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttcttt |
135 |
Q |
| |
|
|||||||| ||||||||||| || || || ||||| |||||||||||||||| || |||||||||||||| || ||||| | || || || || || | |
|
|
| T |
55025762 |
agaatatggttgtattcttgttgaagttcattttccagaagagtgtgtcttagggaatccactctttcaagatagttttgaatccctttaagcctgctct |
55025861 |
T |
|
| Q |
136 |
ccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcattgatggtgttgtgatt |
235 |
Q |
| |
|
|||| || ||||||||| | || |||||| |||| ||||||| |||||| ||||||| || ||||||||| |||| | ||| ||||||||||||| || |
|
|
| T |
55025862 |
ccacttgtttctttcttttaaaaatattgccaaaaacttcattattaaaagtaatggaattttctttgacaatatttaaagctgtgatggtgttgtggtt |
55025961 |
T |
|
| Q |
236 |
agaagtgttccaagagtctcttaccag |
262 |
Q |
| |
|
|||| |||||||||| ||||||||| |
|
|
| T |
55025962 |
tgaagatttccaagagtttcttaccag |
55025988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 511
Target Start/End: Original strand, 15474635 - 15474868
Alignment:
| Q |
278 |
gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagc |
377 |
Q |
| |
|
|||||| ||||| || |||||||| ||||| ||||||||| ||||||||| ||||||||| ||||| ||||| || ||||||||||| ||||| || | |
|
|
| T |
15474635 |
gtggtctatccaggctgcttcaaaacgaaagggtctaggccctctagctagagggagaccgccaaaacggaggaggagaggattgtggtcagaatgcaat |
15474734 |
T |
|
| Q |
378 |
ctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattat |
477 |
Q |
| |
|
||||| || ||||| || ||||||| |||||||| | ||||| |||| ||| || | |||| ||| |||||||| || ||||| | |||||||| | |
|
|
| T |
15474735 |
ctacagaggacttcaacaaaagcttaagggaaggaaagacgccagtcgacattcgccaaacctctgtcaagctttttagagagaatacggatgccattgt |
15474834 |
T |
|
| Q |
478 |
tgttacggtgccaagtataacgaccacctgttgt |
511 |
Q |
| |
|
|||| |||||||||| | |||||||||||||| |
|
|
| T |
15474835 |
tgttcttgtgccaagtaaagcgaccacctgttgt |
15474868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 38648382 - 38648464
Alignment:
| Q |
276 |
ttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagagg |
358 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| || ||| |||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
38648382 |
ttgtggtcaatccaagctgcttcaaagcggaaaggcctgggccctctagctaaagggaggccaccaaaacggaggaggagagg |
38648464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 23423682 - 23423539
Alignment:
| Q |
42 |
tgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttctttccacat |
141 |
Q |
| |
|
|||||||||||||| || | ||||||||||| |||||||||| | ||||| |||||||| || || ||||| || |||||||| || |||| |||| |
|
|
| T |
23423682 |
tgattgtattcttgctgcaattctttttcaaggagagtgtgtcgatatgagtctactctttctagatagttttgaactcccttgagcctattttctacat |
23423583 |
T |
|
| Q |
142 |
gcttctttcttatgaagatattgtcaaagacttcatggttaaaa |
185 |
Q |
| |
|
| ||||| ||| |||| || ||| ||||||||||||| |||||| |
|
|
| T |
23423582 |
gtttcttccttttgaaaatgttgccaaagacttcatgattaaaa |
23423539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 421
Target Start/End: Original strand, 53609509 - 53609645
Alignment:
| Q |
285 |
atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaa |
384 |
Q |
| |
|
||||| ||||||||||| || || || ||||| |||| || | |||||| |||||||| |||||||| || ||||||||||||||||||| || || | |
|
|
| T |
53609509 |
atccaggcagcttcaaaccggaagggcctaggacctctcgcaagagggaggccaccaaaacggagaagaagtggattgtgatcagagtgtaatctgcaga |
53609608 |
T |
|
| Q |
385 |
gtacttccactaaagcttcggggaaggacatgcgcca |
421 |
Q |
| |
|
| ||||| || |||||||| || ||||| | |||||| |
|
|
| T |
53609609 |
gaacttcaacaaaagcttccggaaaggataggcgcca |
53609645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 421
Target Start/End: Original strand, 26433916 - 26434040
Alignment:
| Q |
297 |
tcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccacta |
396 |
Q |
| |
|
||||| |||||||||| || |||| ||||| ||||| || ||||| || || || ||||||||||| ||||| || | ||||||||| || || || | |
|
|
| T |
26433916 |
tcaaaacgaaaaggtcgttgccctcttgctaatgggaggcccccaaaacgaaggagaagaggattgtggtcagaatgaaacctacaaagaacctcaacga |
26434015 |
T |
|
| Q |
397 |
aagcttcggggaaggacatgcgcca |
421 |
Q |
| |
|
||||||| |||||| ||||||||| |
|
|
| T |
26434016 |
aagcttccgggaagctcatgcgcca |
26434040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 38648148 - 38648307
Alignment:
| Q |
42 |
tgattgtattcttggtggagctctttttcaagaagagtgtgtcttaa-agagtccactctttcaaggtaattttggacacccttgagtcttctttccaca |
140 |
Q |
| |
|
|||||||||||||| || | ||||||||||| |||||||| || || |||||| ||||| || | ||| |||||| ||||| ||||| |||| ||| |
|
|
| T |
38648148 |
tgattgtattcttgctgcaattctttttcaaggagagtgtg-ctgaagagagtcaactctctccaaataactttggattccctttagtctattttcaaca |
38648246 |
T |
|
| Q |
141 |
tgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctt |
201 |
Q |
| |
|
|| ||||| ||| |||| ||||| | |||||||||||||| ||| | |||||||| |||| |
|
|
| T |
38648247 |
tgtttcttccttttgaaaatatttccgaagacttcatggttgaaagtgatggagttttctt |
38648307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 36 - 466
Target Start/End: Complemental strand, 39011717 - 39011287
Alignment:
| Q |
36 |
agaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttcttt |
135 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| | |||||||||||| | ||| |||||||||||||| || ||||| || || || || || | | |
|
|
| T |
39011717 |
agaatgtgattgtattcttgttgaagttctttttctaaaagagtgtgtctaagagaatccactctttcaagatagttttgaacccctttcagcctgttct |
39011618 |
T |
|
| Q |
136 |
ccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcattgatggtgttgtgatt |
235 |
Q |
| |
|
||||||| | |||||| | || |||||| |||||| ||||||||||||||| || || |||||||||||| |||| | ||| ||||| | || || |
|
|
| T |
39011617 |
ccacatgtctttttcttttaaaaatattgccaaagatttcatggttaaaaatgatagaattgtctttgacaatatttaaagctgaaatggtatcatggtt |
39011518 |
T |
|
| Q |
236 |
agaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggaga |
335 |
Q |
| |
|
| || |||||||||||||||||||||| |||||| |||||||| || |||||||| |||||||||||||| ||||| || ||||| | | ||||| |
|
|
| T |
39011517 |
ggcagagttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggagg |
39011418 |
T |
|
| Q |
336 |
ccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagcta |
435 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| |||||| |||||||||||| | ||| || | |
|
|
| T |
39011417 |
ccaccaaaacggaggagaagtggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatctacatttgcca |
39011318 |
T |
|
| Q |
436 |
ggcctcggtcgagctttttggaaagaattct |
466 |
Q |
| |
|
|| || || || ||||||||||||||||| |
|
|
| T |
39011317 |
taccgcgatcaagttttttggaaagaattct |
39011287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 26790266 - 26790133
Alignment:
| Q |
276 |
ttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgta |
375 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| || || ||| ||| ||||| |||||||| || |||||||| ||||||||||| |||||||| | |
|
|
| T |
26790266 |
ttgtgatcaatccaagcagcttcaaagcggaaaggccttggtcctcgagcaaaaggaagaccaccgaaacggagaaggagaggattgtggtcagagtgaa |
26790167 |
T |
|
| Q |
376 |
gcctacaaagtacttccactaaagcttcggggaa |
409 |
Q |
| |
|
|||| ||||| | ||| || ||||| |||||||| |
|
|
| T |
26790166 |
gcctgcaaaggatttcaacaaaagcctcggggaa |
26790133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 412
Target Start/End: Complemental strand, 16321394 - 16321260
Alignment:
| Q |
278 |
gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagc |
377 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||| |||||| | ||||||||| ||||| ||||| || ||||| || |||||||| || | |
|
|
| T |
16321394 |
gtggtctatccaagctgcttcaaatcgaaaaggtctagggcctctagtaagagggagaccgccaaaacggaggaggagagggttatgatcagaatgcaat |
16321295 |
T |
|
| Q |
378 |
ctacaaagtacttccactaaagcttcggggaagga |
412 |
Q |
| |
|
||||| || ||||| || |||||||| |||||||| |
|
|
| T |
16321294 |
ctacagaggacttcaacaaaagcttcagggaagga |
16321260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 433
Target Start/End: Original strand, 35136419 - 35136570
Alignment:
| Q |
282 |
tcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctac |
381 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||| || ||| |||| ||| ||||||||||| || ||||| || |||||||| |||||||| | |||| |
|
|
| T |
35136419 |
tcgatccatgcagcctcaaaacggaaaggtctcggacctcgggctagaggaagaccaccaaaacgaagaagaagcggattgtggtcagagtgaaatctac |
35136518 |
T |
|
| Q |
382 |
aaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagc |
433 |
Q |
| |
|
| | ||||| || |||||||||||||| | |||||||||||| | |||||| |
|
|
| T |
35136519 |
acaacacttcaacaaaagcttcggggaaagccatgcgccaatcaacattagc |
35136570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 42404419 - 42404508
Alignment:
| Q |
278 |
gtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatc |
367 |
Q |
| |
|
|||||| ||||| || |||||||| || || ||||||||| |||||| || ||||||||| ||||| ||||| || |||||||||||||| |
|
|
| T |
42404419 |
gtggtctatccaggctgcttcaaaacggaagggtctaggccctctaggtagagggagaccgccaaaacggaggaggagaggattgtgatc |
42404508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 26790513 - 26790342
Alignment:
| Q |
29 |
ctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagt |
128 |
Q |
| |
|
|||||| |||||||| ||||||||||| || |||||||||||||| || ||||| | ||||| || | ||||| ||||||||||| ||||| || |
|
|
| T |
26790513 |
ctgaaaaagaatatggttgtattcttgttgcagctctttttcaaggaggacatgtctaagggagtcaacccgctcaagataattttggacccccttaagc |
26790414 |
T |
|
| Q |
129 |
cttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtct |
200 |
Q |
| |
|
||| | ||||| ||| ||||||| | |||||||| |||| |||||||| ||||| || |||||||| ||| |
|
|
| T |
26790413 |
cttttgaccacacgctgctttcttttaaagatatttccaaaaacttcatgattaaagatgatggagttctct |
26790342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 9194807 - 9194871
Alignment:
| Q |
285 |
atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggag |
349 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| |||||| || |||||||||||||| ||||| |
|
|
| T |
9194807 |
atccaagcagcctcaaagtggaaaggtctaggccctctagttagggggagaccaccaaaacggag |
9194871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 40327083 - 40326983
Alignment:
| Q |
324 |
gctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaat |
423 |
Q |
| |
|
|||| ||| ||||||||||| || ||||| || |||||||| |||||||| | ||||| | ||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
40327083 |
gctagaggaagaccaccaaaacgaagaagaagcggattgtggtcagagtgaaatctacacaacacttcaacaaaagcttcggggaaagccatgcgccaat |
40326984 |
T |
|
| Q |
424 |
c |
424 |
Q |
| |
|
| |
|
|
| T |
40326983 |
c |
40326983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 14654637 - 14654674
Alignment:
| Q |
36 |
agaatatgattgtattcttggtggagctctttttcaag |
73 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14654637 |
agaatatgattgtattctttttggagctctttttcaag |
14654674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 36 - 424
Target Start/End: Original strand, 13028373 - 13028761
Alignment:
| Q |
36 |
agaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttcttt |
135 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| | ||||||||||| | ||| |||| |||||||| || ||||| || || || || || || | |
|
|
| T |
13028373 |
agaatgtgattgtattcttgctgaagttctttttctaagagagtgtgtctaagagaatccattctttcaaaatagttttgaacccctttcagcctgctct |
13028472 |
T |
|
| Q |
136 |
ccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcattgatggtgttgtgatt |
235 |
Q |
| |
|
||||||| | |||||| | || |||||| |||||| ||||||||||||||| || || || ||||||||| |||| | ||| ||||| | || || |
|
|
| T |
13028473 |
ccacatgtctttttcttttaaaaatattgccaaagatttcatggttaaaaatgatagaattatctttgacaatatttaaagctgaaatggtatcatggtt |
13028572 |
T |
|
| Q |
236 |
agaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggaga |
335 |
Q |
| |
|
| || |||||||||||||||||||||| |||||| |||||||| || |||||||| |||||||||||||| ||||| || ||||| | | ||||| |
|
|
| T |
13028573 |
ggcagagttccaagagtctcttaccaggctctcatagtctttgtgatcaatccaagcggcttcaaagcgaaacggtctgggtcctctaaccagtgggagg |
13028672 |
T |
|
| Q |
336 |
ccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatc |
424 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| || |||||||| |||||| |||||||||||| |
|
|
| T |
13028673 |
ccaccaaaacggaggagaaggggattgtgatcagagtgaagcctacaaagaacttcgacaaaagcttcagggaagtgcatgcgccaatc |
13028761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 13598796 - 13598425
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||| || |||||| | |||||||| || ||||||||||| | ||||||||||| | |||||||||||| || || || ||| ||| || |
|
|
| T |
13598796 |
atctcttcttgaaaaaggatatgactatattcttgttgaagctctttttctaagagagtgtgtctaagagagtccactctctccagatagttt-ggatac |
13598698 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
| || || || || |||||||| ||||||||| | || ||||||||||||| ||||||||||||| | ||| |||| ||||||||| |||| | ||||| |
|
|
| T |
13598697 |
ctttaagcctgctctccacatgtttctttcttttaaaaatattgtcaaagatttcatggttaaaagtgatg-agttttctttgacattatttaaagcatc |
13598599 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
|| || || || | |||| ||||||| | | |||||||| | ||| || ||| ||||||| |||||||||||||||||||| ||||| | ||| || |
|
|
| T |
13598598 |
aattgtattatggtgggaagagttccaaaaatttcttaccaagttcttataatccttgtggttaatccaagcagcttcaaagcggaaaggacgaggacct |
13598499 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccac |
394 |
Q |
| |
|
|| ||||| || |||| |||||| ||||| || || ||||| ||||| || | || ||||||||||| ||||| |
|
|
| T |
13598498 |
cttgctaagggaagactaccaaagcggagtaggaggggattatgatctgaataaagtctacaaagtacctccac |
13598425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 24894805 - 24894948
Alignment:
| Q |
42 |
tgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttctttccacat |
141 |
Q |
| |
|
|||||||||||||| || | ||||||||||| |||||||||| | ||||| |||||||| || || ||||| || |||||||| || ||||| |||| |
|
|
| T |
24894805 |
tgattgtattcttgctgcaattctttttcaaggagagtgtgtcgatatgagtcaactctttctagatagttttgaacccccttgagcctactttctacat |
24894904 |
T |
|
| Q |
142 |
gcttctttcttatgaagatattgtcaaagacttcatggttaaaa |
185 |
Q |
| |
|
| ||||| ||| |||| || ||| ||||||||||||| |||||| |
|
|
| T |
24894905 |
gtttcttccttttgaaaatgttgccaaagacttcatgattaaaa |
24894948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 23464542 - 23464197
Alignment:
| Q |
21 |
atctctttctgaaacagaatatgattgtattcttggtggagctctttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacac |
120 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| | || || |||||||| | |||||||||||| | ||| |||| ||||||||| |||||||||| | |
|
|
| T |
23464542 |
atctcttcttgaaaaagaatatgattatattcctaatgaagttctttttctaaaagagtgtgtctaacagaatccaatctttcaagataattttggatgc |
23464443 |
T |
|
| Q |
121 |
ccttgagtcttctttccacatgcttctttcttatgaagatattgtcaaagacttcatggttaaaaataatggagttgtctttgacactattgagagcatt |
220 |
Q |
| |
|
| || || || || ||||||||||| |||||| | || |||||| ||||||||||||| |||||| |||| || || |||||||| |||| | | | |
|
|
| T |
23464442 |
ctttaagcctactctccacatgcttttttcttttaaaaatattgccaaagacttcatgattaaaagtaatagaattttctttgacgatatttaaatttgt |
23464343 |
T |
|
| Q |
221 |
gatggtgttgtgattagaagtgttccaagagtctcttaccagggtctcatgatctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctct |
320 |
Q |
| |
|
||| ||||| ||||| |||| ||||||||| | |||||||| | |||||| |||||||||| | ||||| |||||||||||||| || |||||||| || |
|
|
| T |
23464342 |
gatagtgttatgattggaagagttccaagaatttcttaccaagttctcataatctttgtggccaatccaggcagcttcaaagcggaacggtctagggcct |
23464243 |
T |
|
| Q |
321 |
ctagctaaagggagaccaccaaatcggagaagcagaggattgtgat |
366 |
Q |
| |
|
||||||| ||| || |||||||| ||||||| |||||||| |||| |
|
|
| T |
23464242 |
ctagctagaggaaggccaccaaaatggagaagaagaggattatgat |
23464197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 279 - 421
Target Start/End: Original strand, 50237768 - 50237910
Alignment:
| Q |
279 |
tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc |
378 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||| || |||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||| | |
|
|
| T |
50237768 |
tggtcgatccatgctgcttcaaaacgaaaaggtctaagccctctagctaaagggaggccaccaaagcggagaaggaggggattgtgatcagaatgtagac |
50237867 |
T |
|
| Q |
379 |
tacaaagtacttccactaaagcttcggggaaggacatgcgcca |
421 |
Q |
| |
|
||| || || || || |||||||| ||||||| || ||||| |
|
|
| T |
50237868 |
gacataggacctcaacgaaagcttcaaggaaggatatacgcca |
50237910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 5194254 - 5194344
Alignment:
| Q |
277 |
tgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatc |
367 |
Q |
| |
|
||||||| |||||||| |||||||| || ||| |||||||| |||||||||||||||| ||||||| ||||| || |||||||| ||||| |
|
|
| T |
5194254 |
tgtggtcaatccaagctgcttcaaaacggaaatgtctaggccctctagctaaagggaggtcaccaaagcggaggaggagaggattatgatc |
5194344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 50450836 - 50450709
Alignment:
| Q |
285 |
atccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaa |
384 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||| || | || || ||||| || ||||| || || ||||| ||||| || |||||||| || | |
|
|
| T |
50450836 |
atccaagcagcttcaaaacgaaaaggcctaggccctcttgcgaggggaaggccaccgaagcggagtaggaggggattatgatctgaatgtagcctgcata |
50450737 |
T |
|
| Q |
385 |
gtacttccactaaagcttcggggaagga |
412 |
Q |
| |
|
|||| ||||| || ||||| |||||||| |
|
|
| T |
50450736 |
gtacctccacaaaggcttccgggaagga |
50450709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 50451055 - 50450937
Alignment:
| Q |
66 |
ttttcaagaagagtgtgtcttaaagagtccactctttcaaggtaattttggacacccttgagtcttctttccacatgcttctttcttatgaagatattgt |
165 |
Q |
| |
|
|||||||| || ||||||| |||| || ||||||||||| || |||| || || |||||||| ||||| ||||||||||||||| |||| ||||| |
|
|
| T |
50451055 |
ttttcaaggagggtgtgtcggtaagaatcgactctttcaagatacctttgaacgcctttgagtctgctttcaacatgcttctttcttttgaatatatttc |
50450956 |
T |
|
| Q |
166 |
caaagacttcatggttaaa |
184 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
50450955 |
caaaaacttcatgattaaa |
50450937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 508
Target Start/End: Complemental strand, 23944015 - 23943779
Alignment:
| Q |
272 |
atctttgtggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagag |
371 |
Q |
| |
|
|||||| ||||| ||||| || |||||||| || ||||| |||||| ||||||| | |||||| |||||||| |||||||| |||||||| ||||| ||| |
|
|
| T |
23944015 |
atctttatggtctatccaggctgcttcaaatcggaaaggcctaggccctctagcaagagggaggccaccaaaacggagaaggagaggattatgatccgag |
23943916 |
T |
|
| Q |
372 |
tgtagcctacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgc |
471 |
Q |
| |
|
|||| |||||||| ||||| || |||||||| |||||||| | ||||||||| | ||||||||| |||| ||| ||||| || ||||||||| || | |
|
|
| T |
23943915 |
tgtaatctacaaagaacttcaacaaaagcttctgggaaggataagcgccaatctacattagctagccctctgtcaagcttcttagaaagaatttggatac |
23943816 |
T |
|
| Q |
472 |
cattattgttacggtgccaagtataacgaccacctgt |
508 |
Q |
| |
|
|||| | ||||| ||||||||| | ||||||||||| |
|
|
| T |
23943815 |
cattctgattacgatgccaagtaaagcgaccacctgt |
23943779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 319 - 508
Target Start/End: Complemental strand, 7812731 - 7812542
Alignment:
| Q |
319 |
ctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctacaaagtacttccactaaagcttcggggaaggacatgcg |
418 |
Q |
| |
|
||||||||| ||| |||||||| |||||||| || ||||||||||||||||| || || |||||||| || | ||| || ||||| ||||| ||||| || |
|
|
| T |
7812731 |
ctctagctagaggaagaccaccgaatcggagtagaagaggattgtgatcagaatgaagtctacaaaggacctgcacaaaggcttctgggaaagacatacg |
7812632 |
T |
|
| Q |
419 |
ccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattattgttacggtgccaagtataacgaccacctgt |
508 |
Q |
| |
|
||| || | |||||| ||||||| ||| |||||||| || ||||| | ||||| ||||| || | ||||||||| ||||||| ||||| |
|
|
| T |
7812631 |
ccagtcaacattagcaaggcctctgtcaagctttttcgagagaatacggatgccgttattatttctatgccaagtaaaacgaccgcctgt |
7812542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 493
Target Start/End: Complemental strand, 7908 - 7694
Alignment:
| Q |
279 |
tggtcgatccaagcagcttcaaagcgaaaaggtctaggctctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcc |
378 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| || ||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
7908 |
tggtcaatccaagcagcttcaaatcggaaaggtcgtggtcctcgagcgaaaggtagaccaccaaagcggagaaggagaggattatgatcagagtgaagcc |
7809 |
T |
|
| Q |
379 |
tacaaagtacttccactaaagcttcggggaaggacatgcgccaatcgatattagctaggcctcggtcgagctttttggaaagaattcttatgccattatt |
478 |
Q |
| |
|
| ||||| | ||| || ||||| |||||||||| | ||||||| | | |||||||| |||| || ||||| |||||||| || | | |||||| || |
|
|
| T |
7808 |
tgcaaaggatttcaacaaaagcctcggggaaggcaaggcgccaaccaacattagctaaacctctatcaagcttcttggaaaggatgcgaaggccattgtt |
7709 |
T |
|
| Q |
479 |
gttacggtgccaagt |
493 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
7708 |
gttccgatgccaagt |
7694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 8158 - 8114
Alignment:
| Q |
29 |
ctgaaacagaatatgattgtattcttggtggagctctttttcaag |
73 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8158 |
ctgaaaaagaatatggttgtattcttgttggagctctttttcaag |
8114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 67769 - 67706
Alignment:
| Q |
319 |
ctctagctaaagggagaccaccaaatcggagaagcagaggattgtgatcagagtgtagcctaca |
382 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
67769 |
ctctggctaaaggaagaccaccaaaacgaagaagaagcggattatgatcagagtggagcctaca |
67706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University