View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_high_18 (Length: 374)
Name: NF8910_high_18
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 41856235 - 41855874
Alignment:
| Q |
15 |
cagagatgtcttttaactttaacatttgcataacgagtaagattcaaattcaagaagagtaactcgtagtcttgaattatatctcttacataaaattcac |
114 |
Q |
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| T |
41856235 |
cagagatgtcttttaacttgaatatttgcataacgggtaagattcaaattcaacaagagtaactcgtagtcttgaattatatctcttacgtaaaatccac |
41856136 |
T |
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| Q |
115 |
actcaaccttttgatatgatatattctcaaaagcccgtgttttaatggtcaggcacaac-tatccatgtatacttaatgctctaagaaatgtaccttaaa |
213 |
Q |
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| T |
41856135 |
actcaacctttttatatgatatattctcaaaagcccgtgttttaatggtcaggcacgacttatccatgtatacttaatgctctaagaaatgtaccttaaa |
41856036 |
T |
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| Q |
214 |
attttagaagaaccatccctagttccatattcacataaacgagtctatcaagagtactcatataactagatactctactctactctac-ttacggtataa |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
41856035 |
attttagaagaaacatccctagttccatattcacataagcgagtctatcaagagtactcatataactagatactctactatactatactttacggtataa |
41855936 |
T |
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| Q |
313 |
atcttattatgagtttatcattctcttaatgctttaggagtcgtgcttctattatttataat |
374 |
Q |
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| T |
41855935 |
atcttattaggagtttatcattctcttaatgctttaggagtcgtgcttctattatttataat |
41855874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 41862491 - 41862408
Alignment:
| Q |
43 |
cataacgagtaagattcaaattcaagaagagtaactcgtagtcttgaattatatctcttacataaaattcacactcaacctttt |
126 |
Q |
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| T |
41862491 |
cataacgagtaagattcagattcaacaagagtgactcgtagtctcgaactccttctcttacataaaacccacacacaacctttt |
41862408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 23388149 - 23388053
Alignment:
| Q |
30 |
actttaacatttgcataacgagtaagattcaaattcaagaagagtaactcgtagtcttgaattatatctcttacataaaattcacactcaacctttt |
126 |
Q |
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|||| ||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||| || | ||||||| ||||| ||||||||| |||| |||| |
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| T |
23388149 |
acttgaacatttgcattacgagtaaaattcagcttcaacaagagtgactcgtaatcttaaactctatctctaacatagaattcacacacaacttttt |
23388053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 14916721 - 14916689
Alignment:
| Q |
242 |
attcacataaacgagtctatcaagagtactcat |
274 |
Q |
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| T |
14916721 |
attcacataaatgagtctatcaagagtactcat |
14916689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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