View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8910_high_24 (Length: 332)
Name: NF8910_high_24
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 8379574 - 8379872
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8379574 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
8379673 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8379674 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
8379773 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatatatctaagagaagaatct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8379774 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatatatctaagagaagaatct |
8379872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 23783760 - 23784039
Alignment:
| Q |
20 |
ttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagatt |
119 |
Q |
| |
|
||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| | |||||||| | |
|
|
| T |
23783760 |
ttgccaaatatctctaatacttccttccttgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtct |
23783859 |
T |
|
| Q |
120 |
cttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtt |
219 |
Q |
| |
|
|||||||||| | | ||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||| ||| |||||||| |||||| |
|
|
| T |
23783860 |
cttgccctgcaacatggaataacctgcattccccgactacttcttcaagactcaatcccatattcttgacgtttccatgttctttaatttctctgtggtt |
23783959 |
T |
|
| Q |
220 |
tgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| |||||||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
23783960 |
cgactctaggaggagacctaataagtcattctcagtggcttcacctgccttaattgctttttccctcttgttaattatat |
23784039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 23768311 - 23768032
Alignment:
| Q |
20 |
ttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagatt |
119 |
Q |
| |
|
||||||||||| | ||||||||||| || ||||||||||||||||| |||| |||||||||||| | ||| ||||||||||||| | |||||||| | |
|
|
| T |
23768311 |
ttgccaaatatctctaatacttccttccgggcacgttcttgccaatctgggtgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtct |
23768212 |
T |
|
| Q |
120 |
cttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtt |
219 |
Q |
| |
|
|||||||||| | | ||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| |||||| |
|
|
| T |
23768211 |
cttgccctgcaatatggaataacatgcattccccgactacttcttcaagactcaatcccatattcttgaagtttccatgttctttaatttctttgtggtt |
23768112 |
T |
|
| Q |
220 |
tgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
23768111 |
cgactctaggaggagacctaataagtcattctcagtggcttcacctgcctttattgctttctccctcttgttaattatat |
23768032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 30425012 - 30424731
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||| | |
|
|
| T |
30425012 |
tgttgccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcagggtacctactcaacaacaccattgtccaaacaagcaaaacagaagtggt |
30424913 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||| | | |||||| |||||||||||||| | |||||| ||||| || || ||| ||||||| ||| |
|
|
| T |
30424912 |
ctcttggcctgcaaagtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccgtgttcttccatttctttgtga |
30424813 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||||| ||| | |||||| ||||||| || ||| |||||||||||||| | |||| | ||||| |||||||| |||| |
|
|
| T |
30424812 |
tttgactctaaaagtatacctaataagtcatccttagtggcttcacctgcctttagtgctctttctctcttgttaatcatat |
30424731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 30431045 - 30430764
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||||| | ||||| | |
|
|
| T |
30431045 |
tgttgccaaatacttgtaatacttcttcccttgcacgttcttgccaatctggttacctactcaacaacaccattgtccaaacaagcaaaacagaagtggt |
30430946 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||| | | |||||| |||||||||||||| | |||||| ||||| || || ||| ||||||| || |
|
|
| T |
30430945 |
ctcttgtcctgcaaagtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccttgttcttccatttctttttga |
30430846 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||||| ||| | |||||| ||||||| || |||||||| |||||| || | |||| | ||||| ||||||||||||| |
|
|
| T |
30430845 |
tttgactctaaaagtatacctaataagtcatccttagttgctttacctgcttttagtgctctttctctcttgttaattatat |
30430764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 30437300 - 30437019
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||||| | ||||| | |
|
|
| T |
30437300 |
tgttgccaaatacttgtaatacttcctcccttgcacgtgcttgccaatcagggtacctactcaacaacactattgtccaaacaagcaaaacagaagttgt |
30437201 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||| ||||| |||||||||| |||||||||| | | |||||| |||||||||||||| | |||||| ||||| |||| ||| ||||||| ||| |
|
|
| T |
30437200 |
ctctgcacctgcaaagtagaatagcttgcattcctctattacatcgtcaagactcattccaacattcttattgttgtcatgttcttccatttctttgtga |
30437101 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||||| ||| | ||||||||| |||| || ||||||||||||||| | | |||| ||||||| ||||||| |||| |
|
|
| T |
30437100 |
tttgactctaaaagtatacctaacaaatcatcctttgttgcttcacctgccattagtgctctctctctcgtgttaatcatat |
30437019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 30469111 - 30468830
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| ||||| |||||||||| |||||||||||||| || | ||||||||||||||||| | ||||| | |
|
|
| T |
30469111 |
tgttgccaaagacctgtaatacttcttcccttgcacgcgcttgccaatcggggtacctactcaataacaccattgtccaaacaagcaaaacagaagtggt |
30469012 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||| | | ||||| |||||||||||||| | || ||| ||||| ||||| ||| ||||||| ||| |
|
|
| T |
30469011 |
ctcttggcctgcaaagtagaatagcttgcattcctctatcacatcatcaagactcattccgacatccttattgttgccatgttcttccatttctttgtga |
30468912 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||||| ||| | ||||||||| |||| || |||||||||||||||||| | |||| | ||||| |||||||| |||| |
|
|
| T |
30468911 |
tttgactctaaaagtatacctaacaaatcatccttagttgcttcacctgcctttagtgctctttctctgttgttaatcatat |
30468830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 30395039 - 30394880
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30395039 |
tgttgccaaagacatgtaacacttcctccctagcacgtgtttgccaatcagggtacctactcaacaatatcattgtccaaacaagcaaaaccgaagtagt |
30394940 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcc |
177 |
Q |
| |
|
|||||||||||| || | ||| |||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
30394939 |
ttcttgccctgcaaaatggaacaacttgcattcctcgactacatgatcaagactcattcc |
30394880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 30484034 - 30483753
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| | ||||| |||||||| || |||||| ||||||||| ||||| ||||||||| |||| |||||||||||||||| | |||||| | |
|
|
| T |
30484034 |
tgttgccaaaaacttgtagcacttcctctcttgcacgtgcttgccaattagggtgcctactcaataatacaattgtccaaacaagcaaaactgaagtggt |
30483935 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||||| |||||| | |||||||| |||||||||| | |||||| |||||| ||||||| | |||||| ||||| | |||| ||||||| | ||| |
|
|
| T |
30483934 |
ttcttcccctgcaaggtagaatagcttgcattccttgattacatcatcaagattcattccaacattcttattgttgttgttatctttaatttccttgtga |
30483835 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||| ||| |||||||||||||| ||| || | ||||| |||||||| |||| |
|
|
| T |
30483834 |
tttgactcaagaagaatacctaataagtcattcttagtggcttcacctgcctttatttctctttctctcttgttaataatat |
30483753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 30384605 - 30384430
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
30384605 |
tgttgccaaagacatgtaacacttcctcccttgcacgggtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaaccgaagtagt |
30384506 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgttt |
193 |
Q |
| |
|
||||| ||||| |||| ||| |||||||||||| | |||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
30384505 |
ctcttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttt |
30384430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 299
Target Start/End: Complemental strand, 30476056 - 30475792
Alignment:
| Q |
35 |
aatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagt |
134 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||| | ||||| | ||||||||||| |||| |
|
|
| T |
30476056 |
aatacttcctcccttgcacgagcttgccaatcaggatacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaaagt |
30475957 |
T |
|
| Q |
135 |
agaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaag |
234 |
Q |
| |
|
|||||| ||||||||| | | |||||| |||||||||||||| | || ||| ||||| | || ||| ||||||| ||| || |||| | ||| | |
|
|
| T |
30475956 |
agaatagcttgcattcttctattacatcgtcaagactcattccgacatccttattgttgtcgtgttcttccatttctttgtgattcaactccaaaagtat |
30475857 |
T |
|
| Q |
235 |
acctaacaagtcattctcagttgcttcacctgccttcattgctttctctcttttgttaattatat |
299 |
Q |
| |
|
|||||| || |||| || |||||||||||| ||||| | ||| ||||||| |||||||| |||| |
|
|
| T |
30475856 |
acctaataaatcatccttagttgcttcacccgcctttagtgcgatctctctcttgttaatcatat |
30475792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 30403983 - 30403917
Alignment:
| Q |
38 |
acttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagca |
104 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
30403983 |
acttcctctctagctcgtgcttgccaatcaggatatctactcaacaatatcattgtccaaacaagca |
30403917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 41627802 - 41628035
Alignment:
| Q |
18 |
tgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtaga |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || | | ||||||| ||||||||||||||||| |||| ||||||||||||||| | ||||||||||| |
|
|
| T |
41627802 |
tgttgccaaagatttgtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagt |
41627901 |
T |
|
| Q |
118 |
ttcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgtttccatgatctctaatttcttggtgg |
217 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | ||||||||||| | ||||||||| |||| |||||||||||| ||| ||||||| | |||| |
|
|
| T |
41627902 |
ctcttgccctgcaaagtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtgg |
41628001 |
T |
|
| Q |
218 |
tttgactctagaagaagacctaacaagtcattct |
251 |
Q |
| |
|
|||| ||||| ||||| |||||| || ||||||| |
|
|
| T |
41628002 |
tttgtctctataagaatacctaataaatcattct |
41628035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 15852326 - 15852438
Alignment:
| Q |
38 |
acttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtaga |
137 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||| ||||| | || || | |||||||||||| |||| | ||||||| | ||||||||||||||||| | |
|
|
| T |
15852326 |
acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgccaagtaaa |
15852425 |
T |
|
| Q |
138 |
ataacttgcattc |
150 |
Q |
| |
|
| || |||||||| |
|
|
| T |
15852426 |
acaatttgcattc |
15852438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University