View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_high_25 (Length: 331)
Name: NF8910_high_25
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 180982 - 181280
Alignment:
| Q |
18 |
actttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttc |
117 |
Q |
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| T |
180982 |
actttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgc |
181081 |
T |
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| Q |
118 |
accctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaata |
217 |
Q |
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| T |
181082 |
accctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctacacctttcattatatgtctcaata |
181181 |
T |
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| Q |
218 |
tcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
316 |
Q |
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| T |
181182 |
tcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
181280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 1701409 - 1701707
Alignment:
| Q |
18 |
actttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttc |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1701409 |
actttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttc |
1701508 |
T |
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| Q |
118 |
accctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctacacctttcattatatgtctcaata |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
1701509 |
accctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatctctacacctttcatcctaagtctcaata |
1701608 |
T |
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| Q |
218 |
tcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttcagagttcttgcactaatgatgtc |
316 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
1701609 |
tcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctctttcagagttcttgcacaaatgatgtc |
1701707 |
T |
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