View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_high_3 (Length: 653)
Name: NF8910_high_3
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 23809843 - 23809549
Alignment:
| Q |
15 |
cagagaactatgaattaaagaaattaaaaatgcaattagctatcattttgaaaaacactagagtattatttaacgagagatccaaaataattaaaattga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23809843 |
cagagaactatgaattaaagaaattaaaaatgcaattagctatcattttgaaaaacactagagtattatttaacgagagatccaaaataattaaaattga |
23809744 |
T |
|
| Q |
115 |
aaaagtagaaatactacacggaaaaaatattaacagatatagaaagtattgaggnnnnnnnnnttgattctcaataatttttctcaaaacccatgttgac |
214 |
Q |
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||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23809743 |
aaaagtagaaagactacccggaaaaaatattaacaaatatagaaagtattgaggaaaaaaaaattgattctcaataatttttctcaaaacccatgttgac |
23809644 |
T |
|
| Q |
215 |
tatcaaaataagaatttaactatcaagcataagaaaaacatgacaataaatatcaattacccggcaaattcttaagctatagcttaaaactaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23809643 |
tatcaaaataagaatttaactatcaagcataagaaaaacatgacaataaatatcaattacccggcaaattcttaagctatagcttaaaactaact |
23809549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 41419097 - 41419026
Alignment:
| Q |
432 |
ttttattttaatcttaccctttatttaaaaaagcatcgacagattgaattctcaactcaattcaatcaatat |
503 |
Q |
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| T |
41419097 |
ttttatttcaaatttaccctttatttaaaaaggaatcaatatgctgaattctcaactcaattcaatcaatat |
41419026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 509
Target Start/End: Complemental strand, 34970778 - 34970744
Alignment:
| Q |
475 |
ttgaattctcaactcaattcaatcaatatatagtt |
509 |
Q |
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|
| T |
34970778 |
ttgaattgtcaactcaattcaatcaatatatagtt |
34970744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 576
Target Start/End: Original strand, 33600228 - 33600271
Alignment:
| Q |
533 |
agatcataaacaatccaagactaaaattaagtattaaaacaaac |
576 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
33600228 |
agatcataaacaatccaagaccaaaattaagttttaaaacaaac |
33600271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 509
Target Start/End: Original strand, 3215344 - 3215378
Alignment:
| Q |
475 |
ttgaattctcaactcaattcaatcaatatatagtt |
509 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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|
| T |
3215344 |
ttgaattgtcaactcaattcaatcaatatatagtt |
3215378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 509
Target Start/End: Complemental strand, 19626080 - 19626046
Alignment:
| Q |
475 |
ttgaattctcaactcaattcaatcaatatatagtt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
19626080 |
ttgaattctcaactcaattcaatcaatatgtagtt |
19626046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 23701637 - 23701581
Alignment:
| Q |
449 |
cctttatttaaaaaagcatcgacagattgaattctcaactcaattcaatcaatatat |
505 |
Q |
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| T |
23701637 |
cctttatttaaaaaaacatcaatatgttgaattctcaactcaattaaatcaatatat |
23701581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 503
Target Start/End: Original strand, 41809245 - 41809317
Alignment:
| Q |
430 |
tattttattttaatcttaccctttatttaaaaaagcatcgacagattgaattctcaactcaattcaatcaatat |
503 |
Q |
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||||||||| ||| ||||||||||||||||||| | || | | || ||||| ||||||||||||||||||||| |
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| T |
41809245 |
tattttattccaattttaccctttatttaaaaaa-cgtcaataaatagaattttcaactcaattcaatcaatat |
41809317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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