View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_high_4 (Length: 636)
Name: NF8910_high_4
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 619
Target Start/End: Original strand, 7817999 - 7818610
Alignment:
| Q |
16 |
attccaaattacaaacaagattgataaaatgatggtcaaaagcgttttacccccctaatttataggttga-ttacacattccaccctcatttattaattt |
114 |
Q |
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| T |
7817999 |
attccaaattccaaacaagattgataaaaggatggtcaaaagcgttttacccccctaatttataggttgaattacacattccatcctcatttattaattt |
7818098 |
T |
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| Q |
115 |
ggctatattacaccctaatttaacattatctattgcaattctcccctaacttattcaacaaggcaaacataacctagcaattaagaggacaccaacaaag |
214 |
Q |
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| T |
7818099 |
ggctatattacaccctaatttaacattatctattgcaattctcccctaacttattcaacaaggcaaacataacctagcaattaagaggacaccaacaa-g |
7818197 |
T |
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| Q |
215 |
gcaaaacatattttgttaaacttatttaacacctcatattctcttatctcttaattatttcccatcacatcacaaatttatcatacttattacatatttt |
314 |
Q |
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| T |
7818198 |
gcaaaacatattttgttaaacttatttaacacctcatattctcttatctcttaattatttcccatcacatcacaaatttatcatacttatcacatatttt |
7818297 |
T |
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| Q |
315 |
tctatatgtatttctctctcaaggtatatacactcacataatgcatattcatccttaggataatattgttgtggaagacaaaatgtagaaaaggtggaac |
414 |
Q |
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| T |
7818298 |
tctatatgtatttctctctcaaggtatataccctcacataatgcatattcatccttaggataatattgttgtggaagacaaaatgtagaaaaggtggaac |
7818397 |
T |
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| Q |
415 |
ggtcgattcaatctttgatgtgtgaaattctttgtacaaaaagacctatat-----ttgggtttttcccaatacaattctctccaatccgttcac----a |
505 |
Q |
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| T |
7818398 |
ggtcgattcaatctttgatgtgtgaaattctttgtacaaaaagacctatattagacttaggtttttcccaatacaattctctccaatccgttcacaagaa |
7818497 |
T |
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| Q |
506 |
agaatcactgagaaagaactttattatcatttctcttttatgtatgatgtttttgcttcttctttgctcttactgtacgtgtgaattattcatgcctttt |
605 |
Q |
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| T |
7818498 |
agaatcagtgagaaagaactttattatcgtttctcttttatgtatgatgtttgtgcttcttctttgctcttactgtacgtgtgaattattcatg-ctttt |
7818596 |
T |
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| Q |
606 |
aacacttgaaatga |
619 |
Q |
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| T |
7818597 |
agtacttgaaatga |
7818610 |
T |
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