View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_high_5 (Length: 592)
Name: NF8910_high_5
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 15 - 575
Target Start/End: Original strand, 18244695 - 18245256
Alignment:
| Q |
15 |
atactcgagggattagtctctgcagttgctcgcaaaggatgtctaatttacacccnnnnnnn-ctaggttttcgtctctagtctactcgataaatttcac |
113 |
Q |
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| T |
18244695 |
atacttgagagattagtctccgcagttgctagcagaggatgtctgatttacaacaaaaaaaaactaggttttcgtctctagtctactcgataaatttcac |
18244794 |
T |
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| Q |
114 |
tgttctaaattgcaatcgcggttgaagttatattgcgaacataaatattgtaatgcacttataaagaatacgcagcataacaacaaccgtgaccacaaaa |
213 |
Q |
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| T |
18244795 |
tgttctaaattgcaatcgcggttgaagttatattgcgaacataaatattgtaatgcacttataaagaatacgcatgttaacaacaaccacgaccacaaaa |
18244894 |
T |
|
| Q |
214 |
tcaatttatgaaaaccatggtgtctcctacaagaatatgaagtaaacaaaagagaaggatttagagagaaacaacacacaccagagaagtaatcaaaagg |
313 |
Q |
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| T |
18244895 |
tcaatttatgaaaaccatgttgtctcctacaagaatatgaagtaaacaaaagagaaggatttagagagaaacaacacacaccagagaagtaatcaaaagg |
18244994 |
T |
|
| Q |
314 |
tgcttgttgagcatacaaaccaacatgtaggggtccttgcatagcttctctctcaccactcatgtgaggtaaaacatctaaaccatactcaaccctacca |
413 |
Q |
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| T |
18244995 |
tgcttgttgagcatacaaaccaacatgtaggggtccttgcatagcttctctctcaccactcatgtgaggtaaaacatttaaaccatactcaaccctacca |
18245094 |
T |
|
| Q |
414 |
ccatgagcacaatgttggaaagaagtagcatatgggaaaatggacatactattcccaagtggggctccattgagaaaataaggtggtgatgattctgttt |
513 |
Q |
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| T |
18245095 |
ccatgagcacaatgttggaaagaagtagcatattggaaaatggacatactattcccaagtggggctccattgagaaaataaggtggtgatgattctgttt |
18245194 |
T |
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| Q |
514 |
ccattgttgcggtttccctgcggccgaagcttggattttgctccattctgctataaacattt |
575 |
Q |
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| T |
18245195 |
ccattgttgcggtgtccctgcggccgaagcttggattttgctccattctgctgtaaacattt |
18245256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 46864206 - 46864256
Alignment:
| Q |
19 |
tcgagggattagtctctgcagttgctcgcaaaggatgtctaatttacaccc |
69 |
Q |
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| T |
46864206 |
tcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacaccc |
46864256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 36821107 - 36821071
Alignment:
| Q |
18 |
ctcgagggattagtctctgcagttgctcgcaaaggat |
54 |
Q |
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| T |
36821107 |
ctcgagggattagtctctgcagttgcgcgcagaggat |
36821071 |
T |
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