View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_11 (Length: 625)

Name: NF8910_low_11
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_11
NF8910_low_11
[»] chr8 (5 HSPs)
chr8 (1-619)||(23581870-23582488)
chr8 (227-408)||(40272531-40272712)
chr8 (317-375)||(7233635-7233693)
chr8 (326-372)||(36038966-36039012)
chr8 (305-377)||(38616310-38616382)
[»] chr6 (4 HSPs)
chr6 (1-618)||(22208262-22208879)
chr6 (212-401)||(33163994-33164183)
chr6 (229-408)||(16592577-16592756)
chr6 (1-165)||(33164230-33164394)
[»] chr3 (3 HSPs)
chr3 (1-619)||(48101298-48101916)
chr3 (533-619)||(33284999-33285085)
chr3 (296-377)||(34011716-34011797)
[»] chr1 (6 HSPs)
chr1 (1-619)||(9934016-9934634)
chr1 (212-401)||(45032606-45032795)
chr1 (212-388)||(45027771-45027947)
chr1 (1-165)||(45027994-45028158)
chr1 (1-165)||(45032842-45033006)
chr1 (212-388)||(24207989-24208167)
[»] chr7 (1 HSPs)
chr7 (278-619)||(4703652-4703993)
[»] chr5 (4 HSPs)
chr5 (152-352)||(9991970-9992169)
chr5 (248-582)||(29008309-29008643)
chr5 (1-62)||(9991594-9991655)
chr5 (339-408)||(9992211-9992282)
[»] scaffold0009 (2 HSPs)
scaffold0009 (248-456)||(29786-29993)
scaffold0009 (2-84)||(30157-30239)
[»] scaffold0134 (1 HSPs)
scaffold0134 (226-386)||(36578-36738)
[»] chr4 (1 HSPs)
chr4 (533-619)||(16659183-16659269)
[»] scaffold0163 (1 HSPs)
scaffold0163 (533-582)||(33409-33458)


Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 23582488 - 23581870
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    |||||| || ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  23582488 ctttctatgggacaaatcaaaacatttgtaacctctgtgattaattggataccctaagaagacacacggggtcgagcgtggttgcggtttgttgatgata 23582389  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacgaatatacaaaagttgagtaggagaatgatttgaca 200  Q
     |||| |||  ||  |||||||||| ||||||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  23582388 atggatggaatcaggggataacaaacacaaccaaagacacgaaaatgtgtgtaggagggatcacaatgatacaaaagttgagtaggagaatgatttgaca 23582289  T
Q  201 aattctttcgaggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||    
T  23582288 aattctttcgaggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgaggtaggaacggacgaatgagcaagaagagtgcgaat 23582189  T
Q  301 catgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatat 400  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  23582188 catgttgttaatggtgcgtattttactttccgctttgccattttgagatgaagtgtgaggacaagagaaacggaaaataagaccattatcaacacaatat 23582089  T
Q  401 ttatgaaacaatgtattgttgtattcacgcccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtga 500  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |    
T  23582088 ttatgaaacaatgtattgttgtattcacgccctttatcacattgaaaacatttgatagtttgcgaaaattgtgtgtgaatttgattagaaagtgtagtaa 23581989  T
Q  501 acatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgct 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  23581988 acatttcaaaaacttgagatttgtgatttatagggaacgtccacaaaaaatcataataatcatcaaaaaataaaacataataccgatgaccagaggtgct 23581889  T
Q  601 taaaattggtgatgtccat 619  Q
    |||||| || |||||||||    
T  23581888 taaaatcggcgatgtccat 23581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 227 - 408
Target Start/End: Original strand, 40272531 - 40272712
Alignment:
Q  227 agataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgac 326  Q
    |||||||| ||||| ||||  ||||||||||||||||| || |||||||| ||||| || || | | | || ||||| || |||||||| | |||||  |    
T  40272531 agataagttgccatgtgaatagcatgatgccaaaatgacgggggaacagaagaatgagctagcataatacgtatcatattattaatggttcttatttttc 40272630  T
Q  327 gttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaa 408  Q
    |||||||||| |||||||| || || ||||  |||||||||||||| |||| ||| |||| |||||| |||||||| |||||    
T  40272631 gttccgctttcccattttgtgaggatgtgtggggacaagagaaacgaaaaacaaggccatgatcagcgcaatatttttgaaa 40272712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 7233635 - 7233693
Alignment:
Q  317 cgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaa 375  Q
    ||||||| |||||| |||||||||||||| | ||||||||  |||||||| ||||||||    
T  7233635 cgtattttacgttcagctttgccattttgtggtgaagtgtgtggacaagaaaaacggaa 7233693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 36039012 - 36038966
Alignment:
Q  326 cgttccgctttgccattttgagatgaagtgtaaggacaagagaaacg 372  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||||||||    
T  36039012 cgttcagctttgccattttgagaagaagtataaggacacgagaaacg 36038966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 38616310 - 38616382
Alignment:
Q  305 ttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaa 377  Q
    ||||||||||  |||||||  ||||| | ||| ||||||||||| || |||||||||||||| ||||| ||||    
T  38616310 ttgttaatggaccgtatttttcgttcagatttaccattttgagaagatgtgtaaggacaagaaaaacgaaaaa 38616382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 22208262 - 22208879
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    |||||||||  |||||||||||||| | ||  || ||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||    
T  22208262 ctttctgtgcaacaaatcaaaacatttttagactttgtgattagtgggataccctaagaagacatagagggtcgagcgtggttgcagtttgttaatgata 22208361  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacgaatatacaaaagttgagtaggagaatgatttgaca 200  Q
    ||||| ||| ||   ||||| ||||||||||||||||||||||||||  |||||||||||||||||  ||| |||||||||||||||||||||||||| |    
T  22208362 gtggatggaagcgggggatatcaaagacaaccaaagacacgaagatgaatgtaggagggatcacgatgatataaaagttgagtaggagaatgatttgaaa 22208461  T
Q  201 aattctttcgaggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaat 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||| ||||    
T  22208462 aattctttcggggaaggatattaagaagataagtagccatttgaagagcatgatgccaaaatgagggaggaacggatgaatgagcgagaagagtgtgaat 22208561  T
Q  301 catgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatat 400  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  22208562 catgttgttaatggtgcgtattttacattccgctttgccatgttgagatgaagtgtgaggacaagagaaacagaaaataagaccattatcagtacaatat 22208661  T
Q  401 ttatgaaacaatgtattgttgtattcacgcccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtga 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22208662 ttatgaaacaatgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtga 22208761  T
Q  501 acatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgct 600  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||    
T  22208762 acatttcaaaaacttgagatttgtaacttatagggaacatccacaaaatatcagaataatcatccaaaaataaaatataatactgatgaccagaggtact 22208861  T
Q  601 taaaattggtgatgtcca 618  Q
    |||||| |||||||||||    
T  22208862 taaaatcggtgatgtcca 22208879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 401
Target Start/End: Complemental strand, 33164183 - 33163994
Alignment:
Q  212 ggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaa 311  Q
    ||||| ||||| || | |||||| ||||| ||||| |||||||||||||||   || |||||||| || || || || | |||||||||||| || ||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaattgtgggggaacagaagagtgagctagcatagtgcgaatcatattattaa 33164084  T
Q  312 tggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatt 401  Q
    |||| | |||||  ||||||||||| |||||||| || || |||| ||| |||||||| || |||||||| ||||||  || ||||||||    
T  33164083 tggttcttatttttcgttccgctttcccattttgggaggatgtgtgagggcaagagaagcgaaaaataaggccattagtagtacaatatt 33163994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 16592756 - 16592577
Alignment:
Q  229 ataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgacgt 328  Q
    |||||| ||||| ||||| ||||||||||||||||| || |||||| | ||||| || || | |||||| ||||| || ||||| ||   |||||  |||    
T  16592756 ataagttgccatgtgaagagcatgatgccaaaatgacgggggaacaaaagaatgagctagcatagtgcgtatcatattattaattgtttttatttttcgt 16592657  T
Q  329 tccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaa 408  Q
    |||||||| |||||||| || || ||||  |||||||||||||| |||| ||| |||| |||||  |||||||| |||||    
T  16592656 tccgctttcccattttgtgaggatgtgtgtggacaagagaaacgaaaaacaaggccatgatcagtgcaatatttgtgaaa 16592577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33164394 - 33164230
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    ||||||||  ||||||||||||||  |||||||||| |||||   |||||| ||||||||||||| ||| || || || ||||| | ||| | |||| ||    
T  33164394 ctttctgttagacaaatcaaaacacttgtaacctctatgattcaggggataacctaagaagacacgcggagtagaacggggttgtaatttatgaatggta 33164295  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacg 165  Q
    |  || ||  | || |||||||| |||||||||||||| || | ||||||||||  |||||||||    
T  33164294 ggtgatgggagtaatggataacacagacaaccaaagactcgtaaatgtgtgtagctgggatcacg 33164230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 48101298 - 48101916
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  48101298 ctttctgtgcgacaaatcaaaacatttgtatcctctgtgattagtgggataccctaagaagacacacggggtcgagcgtggttctagtttgttaatgata 48101397  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacgaatatacaaaagttgagtaggagaatgatttgaca 200  Q
    ||||| |||  ||  |||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  48101398 gtggatggaaacaggggataacaaagacaaccaaaaacgcgaagatgtgtgtaggagggatcacgatgatacaaaagttgagtaggagagtgatttgaca 48101497  T
Q  201 aattctttcgaggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaat 300  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  48101498 aattctttcgaggaagaatattaagaaggtaagtagccatttgaagagcatgatgccaaaatgagggaggtacagacgaatgagcgagaagagtacgaat 48101597  T
Q  301 catgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatat 400  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||     
T  48101598 catgttgttaatggtgcgtattttacgttccgctttgccattttgagatgaagtatgaggacaagagaaacggaaaacaagaccattatcatcacaatac 48101697  T
Q  401 ttatgaaacaatgtattgttgtattcacgcccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtga 500  Q
    ||||||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||   ||||    
T  48101698 ttatgaaatgatgtattattatattcacgcccattatcacattgaaaacatttgacagtttgagaaaattgtgtgtgaatttgattggaaagtaatgtga 48101797  T
Q  501 acatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgct 600  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48101798 acatttcaaaaacttgtgatttgttacttatagggaatgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtact 48101897  T
Q  601 taaaattggtgatgtccat 619  Q
    |||||| ||||| ||||||    
T  48101898 taaaatcggtgaagtccat 48101916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 619
Target Start/End: Complemental strand, 33285085 - 33284999
Alignment:
Q  533 gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgcttaaaattggtgatgtccat 619  Q
    ||||| ||||||||||||| |||||| | |||||||||||||||||||||    ||||| |  | |||||||||||| |||||||||    
T  33285085 gggaatgtccacaaaaaattagaatagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccat 33284999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 34011797 - 34011716
Alignment:
Q  296 cgaatcatgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaa 377  Q
    ||||| || ||||||||||  |||||||  ||||| | ||| ||||||||||| || |||||||||||||| ||||| ||||    
T  34011797 cgaataatattgttaatggaccgtatttttcgttcagatttaccattttgagaagatgtgtaaggacaagacaaacgaaaaa 34011716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 9934016 - 9934634
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  9934016 ctttctgtgcgacaaatcaaaacatttgtatcctctgtgattagtgggataccctaagaagacacacggggtcgagcgtggttctagtttgttaatgata 9934115  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacgaatatacaaaagttgagtaggagaatgatttgaca 200  Q
    ||||| |||  ||  |||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  9934116 gtggatggaaacaggggataacaaagacaaccaaaaacgcgaagatgtgtgtaggagggatcacgatgatacaaaagttgagtaggagagtgatttgaca 9934215  T
Q  201 aattctttcgaggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaat 300  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  9934216 aattctttcgaggaagaatattaagaaggtaagtagccatttgaagagcatgatgccaaaatgagggaggtacagacgaatgagcgagaagagtacgaat 9934315  T
Q  301 catgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatat 400  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||     
T  9934316 catgttgttaatggtgcgtattttacgttccgctttgccattttgagatgaagtatgaggacaagagaaacggaaaacaagaccattatcatcacaatac 9934415  T
Q  401 ttatgaaacaatgtattgttgtattcacgcccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtga 500  Q
    ||||||||  ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||   ||||    
T  9934416 ttatgaaatgatgtattattatattcacgcccattatcacattgaaaacatttgacagtttgagaaaattgtgtgtgaatttgattggaaagtaatgtga 9934515  T
Q  501 acatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgct 600  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9934516 acatttcaaaaacttgtgatttgttacttatagggaatgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtact 9934615  T
Q  601 taaaattggtgatgtccat 619  Q
    |||||| ||||| ||||||    
T  9934616 taaaatcggtgaagtccat 9934634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 401
Target Start/End: Complemental strand, 45032795 - 45032606
Alignment:
Q  212 ggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaa 311  Q
    ||||| ||||| || | |||||| ||||| ||||| |||||||||||||||   || |||||||| || || || || | |||||||||||| || ||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaattgtgggggaacagaagagtgagctagcatagtgcgaatcatattattaa 45032696  T
Q  312 tggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatt 401  Q
    |||| | |||||  ||||||||||| |||||||| || || |||| ||| |||||||| || |||||||| ||||||  || ||||||||    
T  45032695 tggttcttatttttcgttccgcttttccattttgggaggatgtgtgagggcaagagaagcgaaaaataaggccattagtagtacaatatt 45032606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 388
Target Start/End: Complemental strand, 45027947 - 45027771
Alignment:
Q  212 ggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaa 311  Q
    ||||| ||||| || | |||||| ||||| ||||| |||||||||||||||   || |||||||| || || || || | |||||||||||| || ||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaattgtgggggaacagaagagtgagctagcatagtgcgaatcatattattaa 45027848  T
Q  312 tggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccatta 388  Q
    |||| | |||||  ||||||||||| |||||||| || || |||| ||| |||||||| || |||||||| ||||||    
T  45027847 tggttcttatttttcgttccgctttaccattttgggaggatgtgtgagggcaagagaagcgaaaaataaggccatta 45027771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 45028158 - 45027994
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    ||||||||  ||||||||||||||  |||||||||| |||||   |||||| ||||||||||||||||| || || || ||||| | ||| | |||| ||    
T  45028158 ctttctgttagacaaatcaaaacacttgtaacctctatgattcaggggataacctaagaagacacacggagtagaacggggttgtaatttatgaatggta 45028059  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacg 165  Q
    |  || ||  | || |||||||| | |||||||||||| || | ||||||||||  |||||||||    
T  45028058 ggtgatgggagtaatggataacacaaacaaccaaagactcgtaaatgtgtgtagctgggatcacg 45027994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 45033006 - 45032842
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttgcagtttgttaatgata 100  Q
    ||||||||  ||||||||||||||  |||||||||| |||||   |||||| ||||||||||||| ||| || || || ||||| | ||| | |||| ||    
T  45033006 ctttctgttagacaaatcaaaacacttgtaacctctatgattcaggggataacctaagaagacacgcggagtagaacggggttgtaatttatgaatggta 45032907  T
Q  101 gtggaaggatgcaaaggataacaaagacaaccaaagacacgaagatgtgtgtaggagggatcacg 165  Q
    |  || ||  | || |||||||| |||||||||||||| || | ||||||||||  |||||||||    
T  45032906 ggtgatgggagtaatggataacacagacaaccaaagactcgtaaatgtgtgtagctgggatcacg 45032842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 388
Target Start/End: Complemental strand, 24208167 - 24207989
Alignment:
Q  212 ggaaggatattaagaagataagtagccatttgaagggcatgatgccaaaatgagggaggaa--cagacgaatgggcgagaagagtgcgaatcatgttgtt 309  Q
    ||||| ||||| || | |||||| ||||| ||||| ||||||||||||||| | || |||   |||| || || || || | |||| ||||||| || ||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaattatgggggagagcagaagagtgagccagcatagtgtgaatcatattatt 24208068  T
Q  310 aatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccatta 388  Q
    |||||| | |||||  ||||||||||| |||||||| || || |||| ||| |||||||| || |||||||| ||||||    
T  24208067 aatggttcttatttttcgttccgctttcccattttgggaggatgtgtgagggcaagagaagcgaaaaataaggccatta 24207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 278 - 619
Target Start/End: Complemental strand, 4703993 - 4703652
Alignment:
Q  278 gaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgacgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaa 377  Q
    ||||| ||||||||||||| ||||||||||||||| ||| |||| | ||||||||||| |||||||| |||||| |||| ||| ||||||||||| ||||    
T  4703993 gaatgagcgagaagagtgcaaatcatgttgttaatagtgtgtatcttacgttccgcttcgccattttaagatgatgtgtgagggcaagagaaacgaaaaa 4703894  T
Q  378 taagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcg 477  Q
    |||||| | ||||| |||||||||||||||| | || ||| || |||||| |||||||||||||| |||||||||| ||| |||| |||||||||||  |    
T  4703893 taagacaagtatcaacacaatatttatgaaatagtgaattattatattcatgcccattatcacatcgaaaacatttaacaatttgagaaaattgtgtatg 4703794  T
Q  478 aatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaaca 577  Q
    ||||||||| ||||||| | | |||||||||||||||| ||| |  |  |||| ||| || ||||||||||||||||||||||||||||| ||||||| |    
T  4703793 aatttgattggaaagtgaaattaacatttcaaaaacttaagactccttgcttacaggaaatgtccacaaaaaatcagaataatcatccaagaataaaata 4703694  T
Q  578 taataccgatgaccagaggtgcttaaaattggtgatgtccat 619  Q
    ||||||| ||||||||||| |||||||| ||| ||| |||||    
T  4703693 taataccaatgaccagaggagcttaaaactggcgatatccat 4703652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 152 - 352
Target Start/End: Original strand, 9991970 - 9992169
Alignment:
Q  152 taggagggatcacgaatatacaaaagttgagtaggagaatgatttgacaaattctttcgaggaaggatattaagaagataagtagccatttgaagggcat 251  Q
    ||||||||  |||||  |||||||| ||||||  |||| ||||||| || ||||||| | | || ||||||||||||||| || ||||||||||| ||||    
T  9991970 taggaggggacacgatgatacaaaatttgagttcgagagtgatttgtcagattcttttg-gaaatgatattaagaagatatgtggccatttgaagtgcat 9992068  T
Q  252 gatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgacgttccgctttgccattttgagatga 351  Q
    |||||||| ||||||||| |||| ||||||| ||||||||| |||||||||||| |||||| || ||||||| || || ||||||  |||||||||||||    
T  9992069 gatgccaagatgagggagaaacatacgaatgagcgagaagactgcgaatcatgtagttaatcgtacgtattttacatttcgctttatcattttgagatga 9992168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 582
Target Start/End: Original strand, 29008309 - 29008643
Alignment:
Q  248 gcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgacgttccgctttgccattttgag 347  Q
    |||||||||||||| || || ||  |||| ||||| || || | |||||| ||||| |||||||||||   |||||  ||||||||||| |||||||| |    
T  29008309 gcatgatgccaaaacgatggtggctcagaagaatgagctagcatagtgcgtatcatattgttaatggtttttatttttcgttccgctttcccattttgtg 29008408  T
Q  348 atgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacattgaaa 447  Q
    | || |||| ||| |||||||| || |||| |||||||| || ||  |||||||  ||||| |    |||||| |||||||  |||||||||||||||||    
T  29008409 acgatgtgtgagggcaagagaagcgaaaaacaagaccatgattagttcaatattgttgaaatagctcattgttatattcaccgccattatcacattgaaa 29008508  T
Q  448 acatttgacagtttgggaaaattgtgtgcgaatttgattagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaa 547  Q
    | |||| | | ||||  |||| |||||  ||||  |||| | |||||   ||||||| ||||| |||||||||||    || ||||| || ||||||||     
T  29008509 agattttatactttgtaaaaactgtgtttgaataagatttgtaagtgacttgaacatgtcaaatacttgagattttctgctaataggaaaagtccacaag 29008608  T
Q  548 aaatcagaataatcatccaaaaataaaacataata 582  Q
    ||||  | ||||||||| |||||||  ||||||||    
T  29008609 aaatttgtataatcatctaaaaataggacataata 29008643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9991594 - 9991655
Alignment:
Q  1 ctttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaaga 62  Q
    ||||||||| ||||||||||||||| ||| |||| |||||||| || |||||||||||||||    
T  9991594 ctttctgtgcgacaaatcaaaacatttgtgacctatgtgattaatgagataccctaagaaga 9991655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 9992211 - 9992282
Alignment:
Q  339 cattttgagatgaagtgtaaggacaagagaaacg--gaaaataagaccattatcagcacaatatttatgaaa 408  Q
    |||||||||||||||||| ||| ||| || || |   |||||||||||||||||||||||||||| ||||||    
T  9992211 cattttgagatgaagtgtgagggcaacagtaatgaaaaaaataagaccattatcagcacaatattaatgaaa 9992282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 456
Target Start/End: Complemental strand, 29993 - 29786
Alignment:
Q  248 gcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttgacgttccgctttgccattttgag 347  Q
    |||||||||||||| ||||| |||||| | ||||| || || | |||||| ||||| || |||||||| | |||||  ||||||||||| |||||||| |    
T  29993 gcatgatgccaaaacgaggggggaacaaaagaatgagctagcatagtgcgtatcatattattaatggttcttattttgcgttccgctttcccattttgtg 29894  T
Q  348 atgaagtgtaaggacaagagaaacggaaaataagaccattatcagcacaatatttatgaaacaatgtattgttgtattcacgcccattatcacattgaaa 447  Q
    | || |||| |||||||||||||| ||||| |||||||| |||||  |||||||  ||||| ||   ||| || |||||||  ||||| ||||||||||     
T  29893 aggatgtgtgaggacaagagaaac-gaaaacaagaccatgatcagtgcaatattgttgaaataactcattattatattcaccaccattgtcacattgaac 29795  T
Q  448 acatttgac 456  Q
    | |||||||    
T  29794 agatttgac 29786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 30239 - 30157
Alignment:
Q  2 tttctgtgtgacaaatcaaaacatctgtaacctctgtgattagtgggataccctaagaagacacacggggttgagcgtggttg 84  Q
    |||||||  ||||||||||||||  |||||||||| |||||||  ||||| || |||||||||||||| || ||||| |||||    
T  30239 tttctgttagacaaatcaaaacacttgtaacctctatgattaggcggataacccaagaagacacacggagtagagcggggttg 30157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 386
Target Start/End: Complemental strand, 36738 - 36578
Alignment:
Q  226 aagataagtagccatttgaagggcatgatgccaaaatgagggaggaacagacgaatgggcgagaagagtgcgaatcatgttgttaatggtgcgtatttga 325  Q
    ||||||||| | ||| || || |||||||||||||| || || |||||||| ||||| || || | |||||| ||||| ||||||||||| | |||||      
T  36738 aagataagttgtcatatggagagcatgatgccaaaacgatggtggaacagaagaatgagctagcatagtgcgtatcatattgttaatggttcttattttt 36639  T
Q  326 cgttccgctttgccattttgagatgaagtgtaaggacaagagaaacggaaaataagaccat 386  Q
    ||||||||||| |||||||| || || |||| ||| |||||||| || |||| ||||||||    
T  36638 cgttccgctttcccattttgtgacgatgtgtgagggcaagagaagcgaaaaacaagaccat 36578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 16659183 - 16659269
Alignment:
Q  533 gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataccgatgaccagaggtgcttaaaattggtgatgtccat 619  Q
    ||||| ||||||||||||| |||||| | |||||||||||||||||||||    ||||| |  | |||||||||||| |||||||||    
T  16659183 gggaatgtccacaaaaaattagaatagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccat 16659269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 582
Target Start/End: Original strand, 33409 - 33458
Alignment:
Q  533 gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataata 582  Q
    ||||| ||||||||||||| |||| | | |||||||||||||||||||||    
T  33409 gggaatgtccacaaaaaattagaacagttatccaaaaataaaacataata 33458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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